Package: tuberculosis
Title: Tuberculosis Gene Expression Data for Machine Learning
Description: The tuberculosis R/Bioconductor package features
        tuberculosis gene expression data for machine learning. All
        human samples from GEO that did not come from cell lines, were
        not taken postmortem, and did not feature recombination have
        been included. The package has more than 10,000 samples from
        both microarray and sequencing studies that have been processed
        from raw data through a hyper-standardized, reproducible
        pipeline.
Authors@R: 
    person(given = "Lucas", family = "Schiffer", role = c("aut", "cre"),
           email = "schiffer.lucas@gmail.com",
           comment = c(ORCID = "0000-0003-3628-0326"))
biocViews: ExperimentHub, ExpressionData, Homo_sapiens_Data,
        MicroarrayData, SequencingData, ReproducibleResearch
Version: 1.19.0
License: Artistic-2.0
Depends: R (>= 4.1.0), SummarizedExperiment
Imports: AnnotationHub, ExperimentHub, S4Vectors, dplyr, magrittr,
        purrr, rlang, stringr, tibble, tidyr
Suggests: BiocStyle, ggplot2, knitr, readr, rmarkdown, scater, usethis,
        utils
URL: https://github.com/schifferl/tuberculosis
BugReports: https://github.com/schifferl/tuberculosis/issues
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
VignetteBuilder: knitr
Config/pak/sysreqs: libicu-dev libpng-dev libssl-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:35:46 UTC
RemoteUrl: https://github.com/bioc/tuberculosis
RemoteRef: HEAD
RemoteSha: 2cdbcd34f7a7cd86c20d71960ce34f4368757df0
NeedsCompilation: no
Packaged: 2026-10-10 10:44:12 UTC; root
Author: Lucas Schiffer [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-3628-0326>)
Maintainer: Lucas Schiffer <schiffer.lucas@gmail.com>