Installation | Example | Delta method-based variance stabilizing transformations | Model residuals-based variance stabilizing transformations | Session Info
Package: transformGamPoi 1.19.0
Constantin Ahlmann-Eltze
transformGamPoi: Variance Stabilizing Transformation for Gamma-Poisson Models
Variance-stabilizing transformations help with the analysis of heteroskedastic data (i.e., data where the variance is not constant, like count data). This package provide two types of variance stabilizing transformations: (1) methods based on the delta method (e.g., 'acosh', 'log(x+1)'), (2) model residual based (Pearson and randomized quantile residuals).
Authors:
transformGamPoi_1.19.0.tar.gz
transformGamPoi_1.19.0.zip(r-4.7-x86_64)transformGamPoi_1.19.0.zip(r-4.7-arm64)transformGamPoi_1.19.0.zip(r-4.6-x86_64)transformGamPoi_1.19.0.zip(r-4.6-arm64)transformGamPoi_1.19.0.zip(r-4.5-x86_64)
transformGamPoi_1.19.0.tgz(r-4.6-x86_64)transformGamPoi_1.19.0.tgz(r-4.6-arm64)transformGamPoi_1.19.0.tgz(r-4.5-x86_64)transformGamPoi_1.19.0.tgz(r-4.5-arm64)
transformGamPoi_1.19.0.tar.gz(r-4.7-arm64)transformGamPoi_1.19.0.tar.gz(r-4.7-x86_64)transformGamPoi_1.19.0.tar.gz(r-4.6-arm64)transformGamPoi_1.19.0.tar.gz(r-4.6-x86_64)
transformGamPoi_1.19.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
transformGamPoi/json (API)
| # Install 'transformGamPoi' in R: |
| install.packages('transformGamPoi', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/const-ae/transformgampoi/issues
On BioConductor:transformGamPoi-1.19.0(bioc 3.24)transformGamPoi-1.18.0(bioc 3.23)
singlecellnormalizationpreprocessingregressioncpp
Last updated from:65fe01422d. Checks:1 NOTE, 15 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | NOTE | 197 | ||
| linux-devel-arm64 | OK | 217 | ||
| linux-devel-x86_64 | OK | 372 | ||
| source / vignettes | OK | 341 | ||
| linux-release-arm64 | OK | 215 | ||
| linux-release-x86_64 | OK | 354 | ||
| macos-release-arm64 | OK | 205 | ||
| macos-release-x86_64 | OK | 337 | ||
| macos-oldrel-arm64 | OK | 182 | ||
| macos-oldrel-x86_64 | OK | 459 | ||
| windows-devel-arm64 | OK | 409 | ||
| windows-devel-x86_64 | OK | 1167 | ||
| windows-release-arm64 | OK | 279 | ||
| windows-release-x86_64 | OK | 1056 | ||
| windows-oldrel-x86_64 | OK | 595 | ||
| wasm-release | OK | 201 |
Exports:acosh_transformresidual_transformshifted_log_transformtransformGamPoi
Dependencies:abindassortheadbeachmatBiobaseBiocGenericsbiocmakecliDelayedArrayDelayedMatrixStatsdir.expiryfilelockgenericsGenomicRangesglmGamPoiglueh5mreadHDF5ArrayIRangeslatticelifecycleMatrixMatrixGenericsmatrixStatsRcppRcppArmadillorhdf5rhdf5filtersRhdf5librlangS4ArraysS4VectorsSeqinfoSingleCellExperimentSparseArraysparseMatrixStatsSummarizedExperimentvctrsXVector
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Delta method-based variance stabilizing transformation | acosh_transform shifted_log_transform |
| Residual-based Variance Stabilizing Transformation | residual_transform |
| Variance Stabilizing Transformation for Gamma Poisson Data | transformGamPoi |
