Package: transformGamPoi 1.11.0

Constantin Ahlmann-Eltze

transformGamPoi: Variance Stabilizing Transformation for Gamma-Poisson Models

Variance-stabilizing transformations help with the analysis of heteroskedastic data (i.e., data where the variance is not constant, like count data). This package provide two types of variance stabilizing transformations: (1) methods based on the delta method (e.g., 'acosh', 'log(x+1)'), (2) model residual based (Pearson and randomized quantile residuals).

Authors:Constantin Ahlmann-Eltze [aut, cre]

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Peer review:

Bug tracker:https://github.com/const-ae/transformgampoi/issues

On BioConductor:transformGamPoi-1.11.0(bioc 3.20)transformGamPoi-1.10.0(bioc 3.19)

bioconductor-package

4 exports 0.49 score 44 dependencies

Last updated 2 months agofrom:281d3ea0d0

Exports:acosh_transformresidual_transformshifted_log_transformtransformGamPoi

Dependencies:abindaskpassbeachmatBiobaseBiocGenericsclicrayoncurlDelayedArrayDelayedMatrixStatsGenomeInfoDbGenomeInfoDbDataGenomicRangesglmGamPoiglueHDF5ArrayhttrIRangesjsonlitelatticelifecycleMatrixMatrixGenericsmatrixStatsmimeopensslR6RcppRcppArmadillorhdf5rhdf5filtersRhdf5librlangS4ArraysS4VectorsSingleCellExperimentSparseArraysparseMatrixStatsSummarizedExperimentsysUCSC.utilsvctrsXVectorzlibbioc