Package: transformGamPoi 1.13.0
Constantin Ahlmann-Eltze
transformGamPoi: Variance Stabilizing Transformation for Gamma-Poisson Models
Variance-stabilizing transformations help with the analysis of heteroskedastic data (i.e., data where the variance is not constant, like count data). This package provide two types of variance stabilizing transformations: (1) methods based on the delta method (e.g., 'acosh', 'log(x+1)'), (2) model residual based (Pearson and randomized quantile residuals).
Authors:
transformGamPoi_1.13.0.tar.gz
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transformGamPoi.pdf |transformGamPoi.html✨
transformGamPoi/json (API)
NEWS
| # Install 'transformGamPoi' in R: |
| install.packages('transformGamPoi', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/const-ae/transformgampoi/issues
On BioConductor:transformGamPoi-1.13.0(bioc 3.21)transformGamPoi-1.12.0(bioc 3.20)
singlecellnormalizationpreprocessingregressioncpp
Last updated 2 months agofrom:c01430252e. Checks:OK: 9. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Dec 18 2024 |
| R-4.5-win-x86_64 | OK | Dec 18 2024 |
| R-4.5-linux-x86_64 | OK | Dec 18 2024 |
| R-4.4-win-x86_64 | OK | Dec 18 2024 |
| R-4.4-mac-x86_64 | OK | Dec 18 2024 |
| R-4.4-mac-aarch64 | OK | Dec 18 2024 |
| R-4.3-win-x86_64 | OK | Dec 18 2024 |
| R-4.3-mac-x86_64 | OK | Dec 18 2024 |
| R-4.3-mac-aarch64 | OK | Dec 18 2024 |
Exports:acosh_transformresidual_transformshifted_log_transformtransformGamPoi
Dependencies:abindaskpassassortheadbeachmatBiobaseBiocGenericsclicrayoncurlDelayedArrayDelayedMatrixStatsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesglmGamPoiglueHDF5ArrayhttrIRangesjsonlitelatticelifecycleMatrixMatrixGenericsmatrixStatsmimeopensslR6RcppRcppArmadillorhdf5rhdf5filtersRhdf5librlangS4ArraysS4VectorsSingleCellExperimentSparseArraysparseMatrixStatsSummarizedExperimentsysUCSC.utilsvctrsXVectorzlibbioc
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Delta method-based variance stabilizing transformation | acosh_transform shifted_log_transform |
| Residual-based Variance Stabilizing Transformation | residual_transform |
| Variance Stabilizing Transformation for Gamma Poisson Data | transformGamPoi |
