Overview | Longitudinal one-sample problem | Longitudinal two-sample problem | Longitudinal multi-sample problem | The amount of moderation | Which Statistic? | Missing data | Outliers | Acknowledgements | Temporal profile plots
Package: timecourse 1.85.0
Yu Chuan Tai
timecourse: Statistical Analysis for Developmental Microarray Time Course Data
Functions for data analysis and graphical displays for developmental microarray time course data.
Authors:
timecourse_1.85.0.tar.gz
timecourse_1.85.0.zip(r-4.7)timecourse_1.85.0.zip(r-4.6)timecourse_1.85.0.zip(r-4.5)
timecourse_1.85.0.tgz(r-4.6-any)timecourse_1.85.0.tgz(r-4.5-any)
timecourse_1.85.0.tar.gz(r-4.7-any)timecourse_1.85.0.tar.gz(r-4.6-any)
timecourse_1.85.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
timecourse/json (API)
| # Install 'timecourse' in R: |
| install.packages('timecourse', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
- fruitfly - Drosophila microarray time course data in Tomancak et al.
On BioConductor:timecourse-1.85.0(bioc 3.24)timecourse-1.84.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
microarraytimecoursedifferentialexpression
Last updated from:5609df0af0. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 150 | ||
| linux-devel-x86_64 | NOTE | 135 | ||
| source / vignettes | OK | 140 | ||
| linux-release-x86_64 | NOTE | 190 | ||
| macos-release-arm64 | NOTE | 88 | ||
| macos-oldrel-arm64 | NOTE | 101 | ||
| windows-devel | NOTE | 83 | ||
| windows-release | NOTE | 91 | ||
| windows-oldrel | NOTE | 85 | ||
| wasm-release | OK | 110 |
Exports:abs2ratiomatrix.covmb.1Dmb.2Dmb.longmb.MANOVAmb.pairedot.helmertplotProfileuniv.func
Dependencies:BiobaseBiocGenericsgenericslimmamarrayMASSstatmod
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Convert log-values to log-ratios | abs2ratio |
| Drosophila microarray time course data in Tomancak et al. (2002) | fruitfly |
| Microarray Time Course Object- class | LargeDataObject-class MArrayTC-class |
| Covariance | matrix.cov |
| Multivariate Empirical Bayes Statistics for Longitudinal Replicated Developmental Microarray Time Course Data | mb.1D mb.2D mb.long mb.paired |
| Multivariate Empirical Bayes Analysis of Variance for Longitudinal Replicated Developmental Microarray Time Course Data | mb.MANOVA |
| Helmert orthogonal transformation | ot.helmert |
| Gene Temporal Profile Plot | plotProfile |
| Univariate Data | univ.func |