Package: timecourse 1.79.0
Yu Chuan Tai
timecourse: Statistical Analysis for Developmental Microarray Time Course Data
Functions for data analysis and graphical displays for developmental microarray time course data.
Authors:
timecourse_1.79.0.tar.gz
timecourse_1.79.0.zip(r-4.5)timecourse_1.79.0.zip(r-4.4)timecourse_1.79.0.zip(r-4.3)
timecourse_1.79.0.tgz(r-4.4-any)timecourse_1.79.0.tgz(r-4.3-any)
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timecourse.pdf |timecourse.html✨
timecourse/json (API)
| # Install 'timecourse' in R: |
| install.packages('timecourse', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
- fruitfly - Drosophila microarray time course data in Tomancak et al.
On BioConductor:timecourse-1.79.0(bioc 3.21)timecourse-1.78.0(bioc 3.20)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
microarraytimecoursedifferentialexpression
Last updated 23 days agofrom:e883bf8b03. Checks:OK: 1 NOTE: 6. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 31 2024 |
| R-4.5-win | NOTE | Oct 31 2024 |
| R-4.5-linux | NOTE | Oct 31 2024 |
| R-4.4-win | NOTE | Oct 31 2024 |
| R-4.4-mac | NOTE | Oct 31 2024 |
| R-4.3-win | NOTE | Oct 31 2024 |
| R-4.3-mac | NOTE | Oct 31 2024 |
Exports:abs2ratiomatrix.covmb.1Dmb.2Dmb.longmb.MANOVAmb.pairedot.helmertplotProfileuniv.func
Dependencies:BiobaseBiocGenericsgenericslimmamarrayMASSstatmod
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Convert log-values to log-ratios | abs2ratio |
| Drosophila microarray time course data in Tomancak et al. (2002) | fruitfly |
| Microarray Time Course Object- class | LargeDataObject-class MArrayTC-class |
| Covariance | matrix.cov |
| Multivariate Empirical Bayes Statistics for Longitudinal Replicated Developmental Microarray Time Course Data | mb.1D mb.2D mb.long mb.paired |
| Multivariate Empirical Bayes Analysis of Variance for Longitudinal Replicated Developmental Microarray Time Course Data | mb.MANOVA |
| Helmert orthogonal transformation | ot.helmert |
| Gene Temporal Profile Plot | plotProfile |
| Univariate Data | univ.func |