{
  "_id": "6a494958a788432aeabf4840",
  "Package": "timecourse",
  "Version": "1.85.0",
  "Date": "2007-6-3",
  "Title": "Statistical Analysis for Developmental Microarray Time Course\nData",
  "Author": "Yu Chuan Tai",
  "Maintainer": "Yu Chuan Tai <yuchuan@stat.berkeley.edu>",
  "Description": "Functions for data analysis and graphical displays for\ndevelopmental microarray time course data.",
  "License": "LGPL",
  "URL": "http://www.bioconductor.org",
  "biocViews": "Microarray, TimeCourse, DifferentialExpression",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:31:18 UTC",
  "RemoteUrl": "https://github.com/bioc/timecourse",
  "RemoteRef": "HEAD",
  "RemoteSha": "5609df0af0885e885a8a365e652e1b8dff6e4d85",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-07-03 14:15:20 UTC",
    "User": "root"
  },
  "_user": "bioc",
  "_type": "src",
  "_file": "timecourse_1.85.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/4044c5f04c7d1ecff47cef983bf867277a7db3985a7d1fbfd313e02db1e01e71",
  "_filesize": 898724,
  "_sha256": "4044c5f04c7d1ecff47cef983bf867277a7db3985a7d1fbfd313e02db1e01e71",
  "_expires": "2026-10-12T17:56:38.000Z",
  "_created": "2026-07-03T14:15:20.000Z",
  "_published": "2026-07-04T17:56:40.307Z",
  "_bioccheck": {
    "error": 2,
    "warning": 2,
    "note": 14
  },
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/28666024929",
  "_status": "success",
  "_upstream": "https://github.com/bioc/timecourse",
  "_commit": {
    "id": "5609df0af0885e885a8a365e652e1b8dff6e4d85",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n",
    "time": 1777379478
  },
  "_maintainer": {
    "name": "Yu Chuan Tai",
    "email": "yuchuan@stat.berkeley.edu"
  },
  "_distro": "resolute",
  "_jobs": [
    {
      "job": 85154147315,
      "time": 150,
      "config": "bioc-checks",
      "r": "4.6.1",
      "check": "ERROR",
      "artifact": "8068777089"
    },
    {
      "job": 85154147362,
      "time": 135,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "8068771928"
    },
    {
      "job": 85154147235,
      "time": 190,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "8068791192"
    },
    {
      "job": 85154147344,
      "time": 101,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "8068760255"
    },
    {
      "job": 85154147324,
      "time": 88,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "8068755919"
    },
    {
      "job": 85154146942,
      "time": 140,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8068724123"
    },
    {
      "job": 85154147306,
      "time": 110,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8068763090"
    },
    {
      "job": 85154147147,
      "time": 83,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "8068754078"
    },
    {
      "job": 85154147247,
      "time": 85,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "8068754948"
    },
    {
      "job": 85154147164,
      "time": 91,
      "config": "windows-release",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "8068756972"
    }
  ],
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 2.1.1",
      "role": "Depends"
    },
    {
      "package": "MASS",
      "role": "Depends"
    },
    {
      "package": "methods",
      "role": "Depends"
    },
    {
      "package": "Biobase",
      "role": "Imports"
    },
    {
      "package": "graphics",
      "role": "Imports"
    },
    {
      "package": "limma",
      "version": ">= 1.8.6",
      "role": "Imports"
    },
    {
      "package": "MASS",
      "role": "Imports"
    },
    {
      "package": "marray",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    }
  ],
  "_owner": "bioc",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 2
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.85.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.84.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "microarray",
    "timecourse",
    "differentialexpression"
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "followers": 445,
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_mentions": 4,
  "_searchresults": 9,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/timecourse.html",
    "manual.pdf"
  ],
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "abs2ratio",
    "matrix.cov",
    "mb.1D",
    "mb.2D",
    "mb.long",
    "mb.MANOVA",
    "mb.paired",
    "ot.helmert",
    "plotProfile",
    "univ.func"
  ],
  "_datasets": [
    {
      "name": "fruitfly",
      "title": "Drosophila microarray time course data in Tomancak et al. (2002)",
      "object": "fruitfly",
      "file": "fruitfly.RData",
      "class": [
        "matrix",
        "array"
      ],
      "fields": [
        "A_01.cel",
        "A_02.cel",
        "A_03.cel",
        "A_04.cel",
        "A_05.cel",
        "A_06.cel",
        "A_07.cel",
        "A_08.cel",
        "A_09.cel",
        "A_10.cel",
        "A_11.cel",
        "A_12.cel",
        "B_01.cel",
        "B_02.cel",
        "B_03.cel",
        "B_04.cel",
        "B_05.cel",
        "B_06.cel",
        "B_07.cel",
        "B_08.cel",
        "B_09.cel",
        "B_10.cel",
        "B_11.cel",
        "B_12.cel",
        "C_01.cel",
        "C_02.cel",
        "C_03.cel",
        "C_04.cel",
        "C_05.cel",
        "C_06.cel",
        "C_07.cel",
        "C_08.cel",
        "C_09.cel",
        "C_10.cel",
        "C_11.cel",
        "C_12.cel"
      ],
      "rows": 2000,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "abs2ratio",
      "title": "Convert log-values to log-ratios",
      "topics": [
        "abs2ratio"
      ]
    },
    {
      "page": "fruitfly",
      "title": "Drosophila microarray time course data in Tomancak et al. (2002)",
      "topics": [
        "fruitfly"
      ]
    },
    {
      "page": "marrayTC-class",
      "title": "Microarray Time Course Object- class",
      "topics": [
        "LargeDataObject-class",
        "MArrayTC-class"
      ]
    },
    {
      "page": "matrix.cov",
      "title": "Covariance",
      "topics": [
        "matrix.cov"
      ]
    },
    {
      "page": "mb.long",
      "title": "Multivariate Empirical Bayes Statistics for Longitudinal Replicated Developmental Microarray Time Course Data",
      "topics": [
        "mb.1D",
        "mb.2D",
        "mb.long",
        "mb.paired"
      ]
    },
    {
      "page": "mb.MANOVA",
      "title": "Multivariate Empirical Bayes Analysis of Variance for Longitudinal Replicated Developmental Microarray Time Course Data",
      "topics": [
        "mb.MANOVA"
      ]
    },
    {
      "page": "ot.helmert",
      "title": "Helmert orthogonal transformation",
      "topics": [
        "ot.helmert"
      ]
    },
    {
      "page": "plotProfile",
      "title": "Gene Temporal Profile Plot",
      "topics": [
        "plotProfile"
      ]
    },
    {
      "page": "univ.func",
      "title": "Univariate Data",
      "topics": [
        "univ.func"
      ]
    }
  ],
  "_rundeps": [
    "Biobase",
    "BiocGenerics",
    "generics",
    "limma",
    "marray",
    "MASS",
    "statmod"
  ],
  "_vignettes": [
    {
      "source": "timecourse.Rnw",
      "filename": "timecourse.pdf",
      "title": "timecourse manual",
      "engine": "utils::Sweave",
      "headings": [
        "Overview",
        "Longitudinal one-sample problem",
        "Longitudinal two-sample problem",
        "Longitudinal multi-sample problem",
        "The amount of moderation",
        "Which Statistic?",
        "Missing data",
        "Outliers",
        "Acknowledgements",
        "Temporal profile plots"
      ],
      "created": "2013-11-01 19:54:51",
      "modified": "2013-11-01 19:54:51",
      "commits": 1
    }
  ],
  "_score": 3.9030899869919438,
  "_indexed": true,
  "_nocasepkg": "timecourse",
  "_universes": [
    "bioc"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.85.0",
      "date": "2026-07-03T14:17:25.000Z",
      "distro": "resolute",
      "commit": "5609df0af0885e885a8a365e652e1b8dff6e4d85",
      "fileid": "https://r2.ropensci.org/d39f452231f54545a22f96f071f5caf44776bf911de34c06d5a413307100da45",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28666024929"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.85.0",
      "date": "2026-07-03T14:18:19.000Z",
      "distro": "resolute",
      "commit": "5609df0af0885e885a8a365e652e1b8dff6e4d85",
      "fileid": "https://r2.ropensci.org/9e184b34b86d2b6af03abccfa78b8a815a8e87b0c38c2b40eec296f4c4344537",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28666024929"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.85.0",
      "date": "2026-07-03T14:16:57.000Z",
      "commit": "5609df0af0885e885a8a365e652e1b8dff6e4d85",
      "fileid": "https://r2.ropensci.org/d146745fe4300cf1af1df1404c637f11cd4d2d91afcae6ce476a7630c20878d1",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28666024929"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.85.0",
      "date": "2026-07-03T14:16:46.000Z",
      "commit": "5609df0af0885e885a8a365e652e1b8dff6e4d85",
      "fileid": "https://r2.ropensci.org/287b8419cadb7c66f19dcf67cb1c781583cef67d3ee432052641083dcfd40190",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28666024929"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.85.0",
      "date": "2026-07-03T14:17:25.000Z",
      "commit": "5609df0af0885e885a8a365e652e1b8dff6e4d85",
      "fileid": "https://r2.ropensci.org/aa53d48e474270677c6db2e3edb2a0a5ff4fa5cc904a6dc5888a384d0feaa57c",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28666024929"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.85.0",
      "date": "2026-07-03T14:16:26.000Z",
      "commit": "5609df0af0885e885a8a365e652e1b8dff6e4d85",
      "fileid": "https://r2.ropensci.org/960bc788a94ce2aa32568e198ae43d516f8a307a7a6af01c3b63be8f24661daf",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28666024929"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.85.0",
      "date": "2026-07-03T14:16:30.000Z",
      "commit": "5609df0af0885e885a8a365e652e1b8dff6e4d85",
      "fileid": "https://r2.ropensci.org/2e2e0f71dc743cf1a7c2b1c8e9ea8ac3be4ad64a137ee35e7142790bde03fa60",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28666024929"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.85.0",
      "date": "2026-07-03T14:16:33.000Z",
      "commit": "5609df0af0885e885a8a365e652e1b8dff6e4d85",
      "fileid": "https://r2.ropensci.org/9156aab403bfd9cc97a0b5923d2e41b38cda00316621484cfdb13ebe13289747",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28666024929"
    }
  ]
}