Package: simpleSingleCell 1.37.0
Aaron Lun
simpleSingleCell: A step-by-step workflow for low-level analysis of single-cell RNA-seq data with Bioconductor
Once a proud workflow package, this is now a shell of its former self. Almost all of its content has been cannibalized for use in the "Orchestrating Single-Cell Analyses with Bioconductor" book at https://osca.bioconductor.org. Most vignettes here are retained as reminders of the glory that once was, also providing redirection for existing external links to the relevant OSCA book chapters.
Authors:
simpleSingleCell_1.37.0.tar.gz
simpleSingleCell_1.37.0.zip(r-4.7-any)simpleSingleCell_1.37.0.zip(r-4.6-any)simpleSingleCell_1.37.0.zip(r-4.5-any)
simpleSingleCell_1.37.0.tgz(r-4.6-any)simpleSingleCell_1.37.0.tgz(r-4.5-any)
simpleSingleCell_1.37.0.tar.gz(r-4.7-any)simpleSingleCell_1.37.0.tar.gz(r-4.6-any)
simpleSingleCell_1.37.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
simpleSingleCell/json (API)
| # Install 'simpleSingleCell' in R: |
| install.packages('simpleSingleCell', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
immunooncologyworkflowworkflowsinglecellworkflow
Last updated from:9ca00eba24. Checks:1 WARNING, 8 ERROR, 1 OK. Indexed: yes.
A new build is currently in progress.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | WARNING | 226 | ||
| linux-devel | ERROR | 309 | ||
| source / vignettes | ERROR | 295 | ||
| linux-release | ERROR | 339 | ||
| macos-release | ERROR | 160 | ||
| macos-oldrel | ERROR | 156 | ||
| windows-devel | ERROR | 190 | ||
| windows-release | ERROR | 216 | ||
| windows-oldrel | ERROR | 143 | ||
| wasm-release | OK | 624 |
Exports:chapterPreamblecompileChapterextractCachedprettySessionInfoscrapeDependenciessetupHTML
Dependencies:base64encBiocGenericsBiocManagerBiocStylebookdownbslibcachemcallrcliCodeDependscodetoolsdigestevaluatefastmapfontawesomefsgenericsgraphhighrhtmltoolsjquerylibjsonliteknitrlifecyclememoisemimeotelprocessxpsR6rappdirsrlangrmarkdownsasstinytexxfunXMLyaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Execute chapter preamble code | chapterPreamble |
| Compile a Rmarkdown file | compileChapter |
| Extract cached objects | extractCached |
| Pretty session info | prettySessionInfo |
| Scrape dependencies | scrapeDependencies |
| Set up HTML elements | setupHTML |