Introduction | Paper | Installing and loading the package | Installation | Bioconductor | Input data | Mutation Position Format | Workflow | Get input data | Perform the selecting process | Visualizing the results | Session info
Package: selectKSigs 1.25.0
Zhi Yang
selectKSigs: Selecting the number of mutational signatures using a perplexity-based measure and cross-validation
A package to suggest the number of mutational signatures in a collection of somatic mutations using calculating the cross-validated perplexity score.
Authors:
selectKSigs_1.25.0.tar.gz
selectKSigs_1.25.0.zip(r-4.7-x86_64)selectKSigs_1.25.0.zip(r-4.7-arm64)selectKSigs_1.25.0.zip(r-4.6-x86_64)selectKSigs_1.25.0.zip(r-4.6-arm64)selectKSigs_1.25.0.zip(r-4.5-x86_64)
selectKSigs_1.25.0.tgz(r-4.6-x86_64)selectKSigs_1.25.0.tgz(r-4.6-arm64)selectKSigs_1.25.0.tgz(r-4.5-x86_64)selectKSigs_1.25.0.tgz(r-4.5-arm64)
selectKSigs_1.25.0.tar.gz(r-4.7-arm64)selectKSigs_1.25.0.tar.gz(r-4.7-x86_64)selectKSigs_1.25.0.tar.gz(r-4.6-arm64)selectKSigs_1.25.0.tar.gz(r-4.6-x86_64)
selectKSigs_1.25.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
selectKSigs/json (API)
| # Install 'selectKSigs' in R: |
| install.packages('selectKSigs', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/uscbiostats/hilda/issues
On BioConductor:selectKSigs-1.25.0(bioc 3.24)selectKSigs-1.24.0(bioc 3.23)
softwaresomaticmutationsequencingstatisticalmethodclusteringmutational-signaturesrjagssomatic-mutationscppjags
Last updated from:12a8f02471. Checks:1 WARNING, 15 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | WARNING | 200 | ||
| linux-devel-arm64 | OK | 251 | ||
| linux-devel-x86_64 | OK | 319 | ||
| source / vignettes | OK | 319 | ||
| linux-release-arm64 | OK | 241 | ||
| linux-release-x86_64 | OK | 333 | ||
| macos-release-arm64 | OK | 228 | ||
| macos-release-x86_64 | OK | 629 | ||
| macos-oldrel-arm64 | OK | 197 | ||
| macos-oldrel-x86_64 | OK | 473 | ||
| windows-devel-arm64 | OK | 347 | ||
| windows-devel-x86_64 | OK | 324 | ||
| windows-release-arm64 | OK | 364 | ||
| windows-release-x86_64 | OK | 327 | ||
| windows-oldrel-x86_64 | OK | 265 | ||
| wasm-release | OK | 203 |
Exports:cv_PMSignaturesplitG
Dependencies:abindAnnotationDbiaskpassBHBiobaseBiocBaseUtilsBiocGenericsBiocIOBiocParallelBiostringsbitbit64bitopsblobbootBSgenomeBSgenome.Hsapiens.UCSC.hg19cachemcigarilloclicodacodetoolscowplotcpp11crayoncurlDBIdplyrfarverfastmapforcatsformatRfutile.loggerfutile.optionsgenericsGenomicAlignmentsGenomicFeaturesGenomicRangesggplot2gluegtablegtoolsHiLDAhttrIRangesisobandjsonliteKEGGRESTlabelinglambda.rlatticelifecyclemagrittrmatrixStatsmemoisemimeopensslpillarpkgconfigpngpurrrR2jagsR2WinBUGSR6RColorBrewerRcppRCurlrestfulrRhtslibrjagsrjsonrlangRsamtoolsRSQLitertracklayerS4VectorsS7scalesSeqinfosnowstringistringrsystibbletidyrtidyselectTxDb.Hsapiens.UCSC.hg19.knownGeneutf8vctrsviridisLitewithrXMLXVectoryaml
