Package: selectKSigs 1.17.0
selectKSigs: Selecting the number of mutational signatures using a perplexity-based measure and cross-validation
A package to suggest the number of mutational signatures in a collection of somatic mutations using calculating the cross-validated perplexity score.
Authors:
selectKSigs_1.17.0.tar.gz
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selectKSigs.pdf |selectKSigs.html✨
selectKSigs/json (API)
NEWS
# Install 'selectKSigs' in R: |
install.packages('selectKSigs', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/uscbiostats/hilda/issues
On BioConductor:selectKSigs-1.17.0(bioc 3.20)selectKSigs-1.16.0(bioc 3.19)
Last updated 2 months agofrom:c06f0d44e2
Exports:cv_PMSignaturesplitG
Dependencies:abindAnnotationDbiaskpassBHBiobaseBiocGenericsBiocIOBiocParallelBiostringsbitbit64bitopsblobbootBSgenomeBSgenome.Hsapiens.UCSC.hg19cachemclicodacodetoolscolorspacecowplotcpp11crayoncurlDBIDelayedArraydplyrfansifarverfastmapforcatsformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicFeaturesGenomicRangesggplot2gluegtablegtoolsHiLDAhttrIRangesisobandjsonliteKEGGRESTlabelinglambda.rlatticelifecyclemagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmimemunsellnlmeopensslpillarpkgconfigplogrpngpurrrR2jagsR2WinBUGSR6RColorBrewerRcppRCurlrestfulrRhtslibrjagsrjsonrlangRsamtoolsRSQLitertracklayerS4ArraysS4VectorsscalessnowSparseArraystringistringrSummarizedExperimentsystibbletidyrtidyselectTxDb.Hsapiens.UCSC.hg19.knownGeneUCSC.utilsutf8vctrsviridisLitewithrXMLXVectoryamlzlibbioc