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"convertToTurbo_F" ] }, { "page": "convertToTurbo_Q", "title": "Convert the parameter Q so that turboEM can treat", "topics": [ "convertToTurbo_Q" ] }, { "page": "cv_PMSignature", "title": "Output the maximum potential scale reduction statistic of all parameters estimated", "topics": [ "cv_PMSignature" ] }, { "page": "getBG", "title": "Get the statsus of using the background signature", "topics": [ "getBG" ] }, { "page": "getCounts", "title": "Get the count data in a matrix", "topics": [ "getCounts" ] }, { "page": "getExposures", "title": "Get a matrix of mutational exposures of signatures", "topics": [ "getExposures" ] }, { "page": "getFeatures", "title": "Get a vector of possible features", "topics": [ "getFeatures" ] }, { "page": "getFeatureVec", "title": "Get a matrix of feature vector list", "topics": [ "getFeatureVec" ] }, { "page": "getK", "title": "Get the number of signatures", "topics": [ "getK" ] }, { "page": "getLL", "title": "Get the values of loglikelihood", "topics": [ "getLL" ] }, { "page": "getLogLikelihoodC", "title": "Calculate the value of the log-likelihood for given parameters", "topics": [ "getLogLikelihoodC" ] }, { "page": "getSamplelist", "title": "Get the sample list", "topics": [ "getSamplelist" ] }, { "page": "getSamplelistG", "title": "Get the sample list", "topics": [ "getSamplelistG" ] }, { "page": "getSignatures", "title": "Get an array of signature feature distributions", "topics": [ "getSignatures" ] }, { "page": "getTranscription", "title": "Get the statsus of specifying the transcription bias", "topics": [ "getTranscription" ] }, { "page": "select_kth_fold", "title": "Output the training data or test data", "topics": [ "select_kth_fold" ] }, { "page": "splitG", "title": "Output the maximum potential scale reduction statistic of all parameters estimated", "topics": [ "splitG" ] } ], "_rundeps": [ "abind", "AnnotationDbi", "askpass", "BH", "Biobase", "BiocBaseUtils", "BiocGenerics", "BiocIO", "BiocParallel", "Biostrings", "bit", 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