Package: sechm 1.13.1

Pierre-Luc Germain

sechm: sechm: Complex Heatmaps from a SummarizedExperiment

sechm provides a simple interface between SummarizedExperiment objects and the ComplexHeatmap package. It enables plotting annotated heatmaps from SE objects, with easy access to rowData and colData columns, and implements a number of features to make the generation of heatmaps easier and more flexible. These functionalities used to be part of the SEtools package.

Authors:Pierre-Luc Germain [cre, aut]

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Peer review:

Bug tracker:https://github.com/plger/sechm/issues

On BioConductor:sechm-1.13.0(bioc 3.20)sechm-1.12.0(bioc 3.19)

bioconductor-package

12 exports 1.00 score 72 dependencies 1 dependents

Last updated 28 days agofrom:200063a8e5

Exports:crossHmgetBreaksgetDEAgetDEGslog2FCmeltSEresetAllSechmOptionssafescalesechmsetRowAttrsetSechmOptionsortRows

Dependencies:abindaskpassBiobaseBiocGenericscacirclizecliclueclustercodetoolscolorspaceComplexHeatmapcrayoncurlDelayedArraydigestdoParallelfarverforeachgclusGenomeInfoDbGenomeInfoDbDataGenomicRangesGetoptLongGlobalOptionsgluehttrIRangesiteratorsjsonlitelabelinglatticelifecyclemagrittrMASSMatrixMatrixGenericsmatrixStatsmgcvmimemunsellnlmeopensslpermutepngqapR6randomcoloRRColorBrewerRcppregistryrjsonrlangRtsneS4ArraysS4VectorsscalesseriationshapeSparseArraystringistringrSummarizedExperimentsysTSPUCSC.utilsV8vctrsveganviridisLiteXVectorzlibbioc