Package: sampleClassifier 1.37.0

Khadija El Amrani

sampleClassifier: Sample Classifier

The package is designed to classify microarray RNA-seq gene expression profiles.

Authors:Khadija El Amrani [aut, cre]

sampleClassifier_1.37.0.tar.gz
sampleClassifier_1.37.0.zip(r-4.7-any)sampleClassifier_1.37.0.zip(r-4.6-any)sampleClassifier_1.37.0.zip(r-4.5-any)
sampleClassifier_1.37.0.tgz(r-4.6-any)sampleClassifier_1.37.0.tgz(r-4.5-any)
sampleClassifier_1.37.0.tar.gz(r-4.7-any)sampleClassifier_1.37.0.tar.gz(r-4.6-any)
sampleClassifier_1.37.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
sampleClassifier/json (API)

# Install 'sampleClassifier' in R:

install.packages('sampleClassifier', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:sampleClassifier-1.37.0(bioc 3.24)sampleClassifier-1.36.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

immunooncology classification microarray rnaseq geneexpression

3.30 score 1 scripts 400 downloads 5 exports 74 dependencies

Last updated from:8981a56154. Checks:1 ERROR, 9 OK. Indexed: yes.

Target	Result	Time	Files	Syslog
bioc-checks	ERROR	226
linux-devel-x86_64	OK	423
source / vignettes	OK	334
linux-release-x86_64	OK	429
macos-release-arm64	OK	254
macos-oldrel-arm64	OK	472
windows-devel-x86_64	OK	396
windows-release-x86_64	OK	391
windows-oldrel-x86_64	OK	435
wasm-release	OK	184

Exports:classifyProfile classifyProfile.rnaseq classifyProfile.rnaseq.svm classifyProfile.svm get.heatmap

Dependencies:annotate AnnotationDbi askpass Biobase BiocBaseUtils BiocFileCache BiocGenerics biomaRt Biostrings bit bit64 blob cachem class cli cpp11 crayon curl DBI dbplyr dplyr e1071 farver fastmap filelock generics ggplot2 glue gtable hms httr httr2 IRanges isoband jsonlite KEGGREST labeling lifecycle magrittr MASS memoise MGFM MGFR mime openssl pillar pkgconfig png prettyunits progress proxy purrr R6 RColorBrewer rlang RSQLite S4Vectors S7 scales Seqinfo stringi stringr sys tibble tidyr tidyselect utf8 vctrs viridisLite withr XML xml2 xtable XVector

sampleClassifier Vignette

1 Introduction | 2 Contents of the package | 3 Getting Started | 4 Classification using sampleClassifier | 5 sampleClassifier algorithm details | 6 R sessionInfo

Rendered fromsampleClassifier.Rnwusingutils::Sweave

Last update: 2018-08-30
Started: 2017-01-24

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Sample Classifier	sampleClassifier-package sampleClassifier
Expression profile classification	classifyProfile
Expression profile classification	classifyProfile.rnaseq
Expression profile classification	classifyProfile.rnaseq.svm
Expression profile classification	classifyProfile.svm
display classification results as heatmap	get.heatmap

Usage by other packages (reverse dependencies)