Package: sampleClassifier 1.31.0

Khadija El Amrani

sampleClassifier: Sample Classifier

The package is designed to classify microarray RNA-seq gene expression profiles.

Authors:Khadija El Amrani [aut, cre]

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sampleClassifier.pdf |sampleClassifier.html✨
sampleClassifier/json (API)
NEWS

# Install 'sampleClassifier' in R:
install.packages('sampleClassifier', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

On BioConductor:sampleClassifier-1.31.0(bioc 3.21)sampleClassifier-1.30.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

immunooncologyclassificationmicroarrayrnaseqgeneexpression

3.30 score 269 downloads 5 exports 84 dependencies

Last updated 3 months agofrom:22a67e8817. Checks:7 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 24 2025
R-4.5-winOKJan 24 2025
R-4.5-linuxOKJan 24 2025
R-4.4-winOKJan 24 2025
R-4.4-macOKJan 24 2025
R-4.3-winOKJan 24 2025
R-4.3-macOKJan 24 2025

Exports:classifyProfileclassifyProfile.rnaseqclassifyProfile.rnaseq.svmclassifyProfile.svmget.heatmap

Dependencies:annotateAnnotationDbiaskpassBiobaseBiocFileCacheBiocGenericsbiomaRtBiostringsbitbit64blobcachemclassclicolorspacecpp11crayoncurlDBIdbplyrdigestdplyre1071fansifarverfastmapfilelockgenericsGenomeInfoDbGenomeInfoDbDataggplot2gluegtablehmshttrhttr2IRangesisobandjsonliteKEGGRESTlabelinglatticelifecyclemagrittrMASSMatrixmemoisemgcvMGFMMGFRmimemunsellnlmeopensslpillarpkgconfigplogrpngprettyunitsprogressproxypurrrR6rappdirsRColorBrewerrlangRSQLiteS4VectorsscalesstringistringrsystibbletidyrtidyselectUCSC.utilsutf8vctrsviridisLitewithrXMLxml2xtableXVector

sampleClassifier Vignette

Rendered fromsampleClassifier.Rnwusingutils::Sweaveon Jan 24 2025.

Last update: 2018-08-30
Started: 2017-01-24

Readme and manuals

Help Manual

Help pageTopics
Sample ClassifiersampleClassifier-package sampleClassifier
Expression profile classificationclassifyProfile
Expression profile classificationclassifyProfile.rnaseq
Expression profile classificationclassifyProfile.rnaseq.svm
Expression profile classificationclassifyProfile.svm
display classification results as heatmapget.heatmap