1 Introduction | 2 Contents of the package | 3 Getting Started | 4 Classification using sampleClassifier | 5 sampleClassifier algorithm details | 6 R sessionInfo
Package: sampleClassifier 1.37.0
Khadija El Amrani
sampleClassifier: Sample Classifier
The package is designed to classify microarray RNA-seq gene expression profiles.
Authors:
sampleClassifier_1.37.0.tar.gz
sampleClassifier_1.37.0.zip(r-4.7)sampleClassifier_1.37.0.zip(r-4.6)sampleClassifier_1.37.0.zip(r-4.5)
sampleClassifier_1.37.0.tgz(r-4.6-any)sampleClassifier_1.37.0.tgz(r-4.5-any)
sampleClassifier_1.37.0.tar.gz(r-4.7-any)sampleClassifier_1.37.0.tar.gz(r-4.6-any)
sampleClassifier_1.37.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
sampleClassifier/json (API)
| # Install 'sampleClassifier' in R: |
| install.packages('sampleClassifier', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:sampleClassifier-1.37.0(bioc 3.24)sampleClassifier-1.36.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
immunooncologyclassificationmicroarrayrnaseqgeneexpression
Last updated from:8981a56154. Checks:1 ERROR, 9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 222 | ||
| linux-devel-x86_64 | OK | 395 | ||
| source / vignettes | OK | 331 | ||
| linux-release-x86_64 | OK | 389 | ||
| macos-release-arm64 | OK | 197 | ||
| macos-oldrel-arm64 | OK | 219 | ||
| windows-devel | OK | 490 | ||
| windows-release | OK | 437 | ||
| windows-oldrel | OK | 455 | ||
| wasm-release | OK | 172 |
Exports:classifyProfileclassifyProfile.rnaseqclassifyProfile.rnaseq.svmclassifyProfile.svmget.heatmap
Dependencies:annotateAnnotationDbiaskpassBiobaseBiocFileCacheBiocGenericsbiomaRtBiostringsbitbit64blobcachemclassclicpp11crayoncurlDBIdbplyrdplyre1071farverfastmapfilelockgenericsggplot2gluegtablehmshttrhttr2IRangesisobandjsonliteKEGGRESTlabelinglifecyclemagrittrMASSmemoiseMGFMMGFRmimeopensslpillarpkgconfigpngprettyunitsprogressproxypurrrR6rappdirsRColorBrewerrlangRSQLiteS4VectorsS7scalesSeqinfostringistringrsystibbletidyrtidyselectutf8vctrsviridisLitewithrXMLxml2xtableXVector
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Sample Classifier | sampleClassifier-package sampleClassifier |
| Expression profile classification | classifyProfile |
| Expression profile classification | classifyProfile.rnaseq |
| Expression profile classification | classifyProfile.rnaseq.svm |
| Expression profile classification | classifyProfile.svm |
| display classification results as heatmap | get.heatmap |