Package: rpx 2.13.0
Laurent Gatto
rpx: R Interface to the ProteomeXchange Repository
The rpx package implements an interface to proteomics data submitted to the ProteomeXchange consortium.
Authors:
rpx_2.13.0.tar.gz
rpx_2.13.0.zip(r-4.5)rpx_2.13.0.zip(r-4.4)rpx_2.13.0.zip(r-4.3)
rpx_2.13.0.tgz(r-4.4-any)rpx_2.13.0.tgz(r-4.3-any)
rpx_2.13.0.tar.gz(r-4.5-noble)rpx_2.13.0.tar.gz(r-4.4-noble)
rpx_2.13.0.tgz(r-4.4-emscripten)rpx_2.13.0.tgz(r-4.3-emscripten)
rpx.pdf |rpx.html✨
rpx/json (API)
NEWS
| # Install 'rpx' in R: |
| install.packages('rpx', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/lgatto/rpx/issues
On BioConductor:rpx-2.13.0(bioc 3.20)rpx-2.12.0(bioc 3.19)
Last updated 2 months agofrom:4ffc9c867e
Exports:fileTypespxannouncedpxCachedProjectspxCacheInfoPXDatasetPXDataset1PXDataset2pxfilespxFileTypespxgetpxidpxinstrumentspxprotocolspxptmspxPublicationDatepxrefpxSubmissionDatepxtaxpxtitlepxurlrpxCacheshowupdatePxFileTypes
Dependencies:askpassBiocFileCachebitbit64bitopsblobcachemclicpp11curlDBIdbplyrdplyrfansifastmapfilelockgenericsgluehttrjsonlitelifecyclemagrittrmemoisemimeopensslpillarpkgconfigplogrpurrrR6RCurlrlangRSQLitestringistringrsystibbletidyrtidyselectutf8vctrswithrxml2
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Package cache | cache pxCachedProjects rpxCache |
| Infer file type | fileTypes pxFileTypes updatePxFileTypes |
| Return recent PX announcements | pxannounced |
| The PXDataset to find and download proteomics data | class:PXDataset pxCacheInfo,PXDataset-method PXDataset1 pxfiles,PXDataset-method pxget,PXDataset-method pxid,PXDataset-method pxref,PXDataset-method pxtax,PXDataset-method pxurl,PXDataset-method show,PXDataset-method |
| New PXDataset (v2) to find and download proteomics data | class:PXDataset2 pxCacheInfo pxCacheInfo,PXdataset-method pxCacheInfo,PXDataset2-method PXDataset PXDataset2 pxfiles pxfiles,PXDataset2-method pxget pxget,PXDataset2-method pxid pxid,PXDataset2-method pxinstruments pxprotocols pxptms pxPublicationDate pxref pxref,PXDataset2-method pxSubmissionDate pxtax pxtax,PXDataset2-method pxtitle pxurl pxurl,PXDataset2-method show,PXDataset2-method |
