Package: rpx 2.15.0

Laurent Gatto

rpx: R Interface to the ProteomeXchange Repository

The rpx package implements an interface to proteomics data submitted to the ProteomeXchange consortium.

Authors:Laurent Gatto

rpx_2.15.0.tar.gz
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rpx.pdf |rpx.html✨
rpx/json (API)
NEWS

# Install 'rpx' in R:
install.packages('rpx', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/lgatto/rpx/issues

On BioConductor:rpx-2.15.0(bioc 3.21)rpx-2.14.0(bioc 3.20)

immunooncologyproteomicsmassspectrometrydataimportthirdpartyclientbioconductordatamass-spectrometryproteomexchange

6.00 score 5 stars 20 scripts 496 downloads 1 mentions 23 exports 43 dependencies

Last updated 2 months agofrom:5be79a9995. Checks:OK: 6 ERROR: 1. Indexed: yes.

TargetResultDate
Doc / VignettesOKDec 18 2024
R-4.5-winOKDec 18 2024
R-4.5-linuxOKDec 18 2024
R-4.4-winOKDec 18 2024
R-4.4-macOKDec 18 2024
R-4.3-winOKDec 18 2024
R-4.3-macERRORDec 18 2024

Exports:fileTypespxannouncedpxCachedProjectspxCacheInfoPXDatasetPXDataset1PXDataset2pxfilespxFileTypespxgetpxidpxinstrumentspxprotocolspxptmspxPublicationDatepxrefpxSubmissionDatepxtaxpxtitlepxurlrpxCacheshowupdatePxFileTypes

Dependencies:askpassBiocFileCachebitbit64bitopsblobcachemclicpp11curlDBIdbplyrdplyrfansifastmapfilelockgenericsgluehttrjsonlitelifecyclemagrittrmemoisemimeopensslpillarpkgconfigplogrpurrrR6RCurlrlangRSQLitestringistringrsystibbletidyrtidyselectutf8vctrswithrxml2

An R interface to the ProteomeXchange repository

Laurent Gatto

Rendered fromrpx.Rmdusingknitr::rmarkdownon Dec 18 2024.

Last update: 2021-08-16
Started: 2016-12-22

Readme and manuals

Help Manual

Help pageTopics
Package cachecache pxCachedProjects rpxCache
Infer file typefileTypes pxFileTypes updatePxFileTypes
Return recent PX announcementspxannounced
The PXDataset to find and download proteomics dataclass:PXDataset pxCacheInfo,PXDataset-method PXDataset1 pxfiles,PXDataset-method pxget,PXDataset-method pxid,PXDataset-method pxref,PXDataset-method pxtax,PXDataset-method pxurl,PXDataset-method show,PXDataset-method
New PXDataset (v2) to find and download proteomics dataclass:PXDataset2 pxCacheInfo pxCacheInfo,PXdataset-method pxCacheInfo,PXDataset2-method PXDataset PXDataset2 pxfiles pxfiles,PXDataset2-method pxget pxget,PXDataset2-method pxid pxid,PXDataset2-method pxinstruments pxprotocols pxptms pxPublicationDate pxref pxref,PXDataset2-method pxSubmissionDate pxtax pxtax,PXDataset2-method pxtitle pxurl pxurl,PXDataset2-method show,PXDataset2-method