Package: rpx 2.21.0

Laurent Gatto

rpx: R Interface to the ProteomeXchange Repository

The rpx package implements an interface to proteomics data submitted to the ProteomeXchange consortium.

Authors:Laurent Gatto

rpx_2.21.0.tar.gz
rpx_2.21.0.zip(r-4.7)rpx_2.21.0.zip(r-4.6)rpx_2.21.0.zip(r-4.5)
rpx_2.21.0.tgz(r-4.6-any)rpx_2.21.0.tgz(r-4.5-any)
rpx_2.21.0.tar.gz(r-4.7-any)rpx_2.21.0.tar.gz(r-4.6-any)
rpx_2.21.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
rpx/json (API)
NEWS

# Install 'rpx' in R:
install.packages('rpx', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/lgatto/rpx/issues

On BioConductor:rpx-2.21.0(bioc 3.24)rpx-2.20.0(bioc 3.23)

immunooncologyproteomicsmassspectrometrydataimportthirdpartyclientbioconductordatamass-spectrometryproteomexchange

6.54 score 7 stars 50 scripts 720 downloads 1 mentions 23 exports 41 dependencies

Last updated from:0c655daf60. Checks:1 WARNING, 9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksWARNING153
linux-devel-x86_64OK238
source / vignettesOK228
linux-release-x86_64OK247
macos-release-arm64OK135
macos-oldrel-arm64OK124
windows-develOK113
windows-releaseOK122
windows-oldrelOK122
wasm-releaseOK122

Exports:fileTypespxannouncedpxCachedProjectspxCacheInfoPXDatasetPXDataset1PXDataset2pxfilespxFileTypespxgetpxidpxinstrumentspxprotocolspxptmspxPublicationDatepxrefpxSubmissionDatepxtaxpxtitlepxurlrpxCacheshowupdatePxFileTypes

Dependencies:askpassBiocFileCachebitbit64bitopsblobcachemclicpp11curlDBIdbplyrdplyrfastmapfilelockgenericsgluehttr2jsonlitelifecyclemagrittrmemoiseopensslpillarpkgconfigpurrrR6rappdirsRCurlrlangRSQLitestringistringrsystibbletidyrtidyselectutf8vctrswithrxml2

An R interface to the ProteomeXchange repository

Laurent Gatto

Rendered fromrpx.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2021-08-16
Started: 2016-12-22

Readme and manuals

Help Manual

Help pageTopics
Package cachecache pxCachedProjects rpxCache
Infer file typefileTypes pxFileTypes updatePxFileTypes
Return recent PX announcementspxannounced
The PXDataset to find and download proteomics dataclass:PXDataset pxCacheInfo,PXDataset-method PXDataset1 pxfiles,PXDataset-method pxget,PXDataset-method pxid,PXDataset-method pxref,PXDataset-method pxtax,PXDataset-method pxurl,PXDataset-method show,PXDataset-method
New PXDataset (v2) to find and download proteomics dataclass:PXDataset2 pxCacheInfo pxCacheInfo,PXdataset-method pxCacheInfo,PXDataset2-method PXDataset PXDataset2 pxfiles pxfiles,PXDataset2-method pxget pxget,PXDataset2-method pxid pxid,PXDataset2-method pxinstruments pxprotocols pxptms pxPublicationDate pxref pxref,PXDataset2-method pxSubmissionDate pxtax pxtax,PXDataset2-method pxtitle pxurl pxurl,PXDataset2-method show,PXDataset2-method