Introduction | The r Biocpkg("rpx") package | PXDataset objects | Data and meta-data | A simple use-case | Questions and help | Session information
Package: rpx 2.21.0
Laurent Gatto
rpx: R Interface to the ProteomeXchange Repository
The rpx package implements an interface to proteomics data submitted to the ProteomeXchange consortium.
Authors:
rpx_2.21.0.tar.gz
rpx_2.21.0.zip(r-4.7)rpx_2.21.0.zip(r-4.6)rpx_2.21.0.zip(r-4.5)
rpx_2.21.0.tgz(r-4.6-any)rpx_2.21.0.tgz(r-4.5-any)
rpx_2.21.0.tar.gz(r-4.7-any)rpx_2.21.0.tar.gz(r-4.6-any)
rpx_2.21.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
rpx/json (API)
| # Install 'rpx' in R: |
| install.packages('rpx', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/lgatto/rpx/issues
On BioConductor:rpx-2.21.0(bioc 3.24)rpx-2.20.0(bioc 3.23)
immunooncologyproteomicsmassspectrometrydataimportthirdpartyclientbioconductordatamass-spectrometryproteomexchange
Last updated from:0c655daf60. Checks:1 WARNING, 9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | WARNING | 156 | ||
| linux-devel-x86_64 | OK | 212 | ||
| source / vignettes | OK | 232 | ||
| linux-release-x86_64 | OK | 188 | ||
| macos-release-arm64 | OK | 128 | ||
| macos-oldrel-arm64 | OK | 120 | ||
| windows-devel | OK | 109 | ||
| windows-release | OK | 125 | ||
| windows-oldrel | OK | 125 | ||
| wasm-release | OK | 108 |
Exports:fileTypespxannouncedpxCachedProjectspxCacheInfoPXDatasetPXDataset1PXDataset2pxfilespxFileTypespxgetpxidpxinstrumentspxprotocolspxptmspxPublicationDatepxrefpxSubmissionDatepxtaxpxtitlepxurlrpxCacheshowupdatePxFileTypes
Dependencies:askpassBiocFileCachebitbit64bitopsblobcachemclicpp11curlDBIdbplyrdplyrfastmapfilelockgenericsgluehttr2jsonlitelifecyclemagrittrmemoiseopensslpillarpkgconfigpurrrR6rappdirsRCurlrlangRSQLitestringistringrsystibbletidyrtidyselectutf8vctrswithrxml2
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Package cache | cache pxCachedProjects rpxCache |
| Infer file type | fileTypes pxFileTypes updatePxFileTypes |
| Return recent PX announcements | pxannounced |
| The PXDataset to find and download proteomics data | class:PXDataset pxCacheInfo,PXDataset-method PXDataset1 pxfiles,PXDataset-method pxget,PXDataset-method pxid,PXDataset-method pxref,PXDataset-method pxtax,PXDataset-method pxurl,PXDataset-method show,PXDataset-method |
| New PXDataset (v2) to find and download proteomics data | class:PXDataset2 pxCacheInfo pxCacheInfo,PXdataset-method pxCacheInfo,PXDataset2-method PXDataset PXDataset2 pxfiles pxfiles,PXDataset2-method pxget pxget,PXDataset2-method pxid pxid,PXDataset2-method pxinstruments pxprotocols pxptms pxPublicationDate pxref pxref,PXDataset2-method pxSubmissionDate pxtax pxtax,PXDataset2-method pxtitle pxurl pxurl,PXDataset2-method show,PXDataset2-method |
