px_file_types() and file_types() functions to infer mass
spectrometry and proteomics file types based on their extensions.pxSubmissionDate() and pxPublicationDate() accessor
functions.BiocFileCache::bfcrpath to get correct rpath, irrespective of
absolute or relative.pxinstruments(), pxptms() and pxprotocols() accessors.New PXDataset2 class with richer interface and more stable data
downloading functions. PXDataset and PXDataset2 work
transparently and PXDataset2 is now default.
Add deprecation notice in PXDataset() constructor.
pxCachedProjects() output.README.md.PXDataset object.pxCacheInfo() function and use it to show caching info in
show,PXDataset.Improve documentation.
Check for cached PXDataset object validity.
Fix bug in PXDdataset internal data storage.
New pxCachedProjects() function that return the cached projects.
Fixes and improvements in the documentation.
PXDatasets are also cached upon creation and retrieved from cache next time they are generated.
cache is now returned by rpxCache().
pxannouced() paused (see #7).rappdirs from Suggests.markdown to Suggests.tools::R_user_dir() from rappdirs::user_cache_dir()
to set package cache directory, following changes in BiocFileCache
(see
for details).MS:1002852 to get URL when PRIDE:0000411 returns empty
string.rpx_fix_issue_5 <2019-11-26 Tue>method on Windows <2019-04-16 Tue>pxget gains a destdir argument to specify the destination to which files
should be downloaded <2017-01-27 Fri>