Package: rcellminer 2.27.0
Augustin Luna
rcellminer: rcellminer: Molecular Profiles, Drug Response, and Chemical Structures for the NCI-60 Cell Lines
The NCI-60 cancer cell line panel has been used over the course of several decades as an anti-cancer drug screen. This panel was developed as part of the Developmental Therapeutics Program (DTP, http://dtp.nci.nih.gov/) of the U.S. National Cancer Institute (NCI). Thousands of compounds have been tested on the NCI-60, which have been extensively characterized by many platforms for gene and protein expression, copy number, mutation, and others (Reinhold, et al., 2012). The purpose of the CellMiner project (http://discover.nci.nih.gov/ cellminer) has been to integrate data from multiple platforms used to analyze the NCI-60 and to provide a powerful suite of tools for exploration of NCI-60 data.
Authors:
rcellminer_2.27.0.tar.gz
rcellminer_2.27.0.zip(r-4.5)rcellminer_2.27.0.zip(r-4.4)rcellminer_2.27.0.zip(r-4.3)
rcellminer_2.27.0.tgz(r-4.4-any)rcellminer_2.27.0.tgz(r-4.3-any)
rcellminer_2.27.0.tar.gz(r-4.5-noble)rcellminer_2.27.0.tar.gz(r-4.4-noble)
rcellminer_2.27.0.tgz(r-4.4-emscripten)rcellminer_2.27.0.tgz(r-4.3-emscripten)
rcellminer.pdf |rcellminer.html✨
rcellminer/json (API)
NEWS
# Install 'rcellminer' in R: |
install.packages('rcellminer', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
- Drug_MOA_Key - A data frame with descriptive information for all compound mechanism of action (MOA) abbreviations used in CellMiner.
On BioConductor:rcellminer-2.27.0(bioc 3.20)rcellminer-2.26.0(bioc 3.19)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 months agofrom:48e3a34d95
Exports:crossCorsDrugDatagetActgetActivityRangeStatsgetAllFeatureDatagetBinaryMutationDatagetColumnQuantilesgetDrugActivityDatagetDrugActivityRangegetDrugActivityRepeatDatagetDrugMoaListgetDrugNamegetESetListgetFeatureAnnotgetFeatureDataFromMatListgetMedSenLineActivitygetMinDrugActivityRepeatCorgetMoaStrgetMoaToCompoundsgetMolDataMatricesgetMolDataTypegetNumDrugActivityRepeatsgetNumMissingLinesgetRepeatActgetRsdgetSampleDatagetSmileshasMoainitializeisPublicloadCellminerPlotInfoloadNciColorSetMolDataparCorPatternComparisonpatternComparisonplotCellMinerplotCellMiner2DplotDrugActivityRepeatsplotDrugSetsremoveMolDataTyperestrictFeatureMatrowCorssearchForNscsselectCorrelatedRowsselectCorrelatedRowsFromMatrices
Dependencies:base64encBiobaseBiocGenericsbitopsbslibcachemcaToolsclicolorspacecommonmarkcrayondigestfansifarverfastmapfontawesomefsggplot2gluegplotsgtablegtoolshtmltoolshttpuvisobandjquerylibjsonliteKernSmoothlabelinglaterlatticelifecyclemagrittrMASSMatrixmemoisemgcvmimemunsellnlmepillarpkgconfigpromisesR6rappdirsrcellminerDataRColorBrewerRcpprlangsassscalesshinysourcetoolsstringistringrtibbleutf8vctrsviridisLitewithrxtable