Package: qsmooth 1.29.0

Stephanie C. Hicks

qsmooth: Smooth quantile normalization

Smooth quantile normalization is a generalization of quantile normalization, which is average of the two types of assumptions about the data generation process: quantile normalization and quantile normalization between groups.

Authors:Stephanie C. Hicks [aut, cre], Kwame Okrah [aut], Koen Van den Berge [ctb], Hector Corrada Bravo [aut], Rafael Irizarry [aut]

qsmooth_1.29.0.tar.gz
qsmooth_1.29.0.zip(r-4.7)qsmooth_1.29.0.zip(r-4.6)qsmooth_1.29.0.zip(r-4.5)
qsmooth_1.29.0.tgz(r-4.6-any)qsmooth_1.29.0.tgz(r-4.5-any)
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qsmooth_1.29.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
qsmooth/json (API)

# Install 'qsmooth' in R:

install.packages('qsmooth', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:qsmooth-1.29.0(bioc 3.24)qsmooth-1.28.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

normalization preprocessing multiplecomparison microarray sequencing rnaseq batcheffect

6.42 score 1 packages 294 scripts 3 mentions 6 exports 108 dependencies

Last updated from:c0da2a33d9. Checks:1 FAILURE, 7 WARNING, 2 OK. Indexed: yes.

Target	Result	Time
bioc-checks	FAILURE	258
linux-devel-x86_64	WARNING	391
source / vignettes	OK	404
linux-release-x86_64	WARNING	404
macos-release-arm64	WARNING	316
macos-oldrel-arm64	WARNING	263
windows-devel	WARNING	271
windows-release	WARNING	307
windows-oldrel	WARNING	320
wasm-release	OK	209

Exports:qsmooth qsmoothData qsmoothGC qsmoothPlotWeights qsmoothWeights qstats

Dependencies:abind annotate AnnotationDbi askpass backports base64enc BH Biobase BiocGenerics BiocParallel Biostrings bit bit64 blob bslib cachem checkmate cli cluster codetools colorspace cpp11 crayon curl data.table DBI DelayedArray digest edgeR evaluate farver fastmap fontawesome foreign formatR Formula fs futile.logger futile.options genefilter generics GenomicRanges ggplot2 glue gridExtra gtable highr Hmisc htmlTable htmltools htmlwidgets httr IRanges isoband jquerylib jsonlite KEGGREST knitr labeling lambda.r lattice lifecycle limma locfit magrittr Matrix MatrixGenerics matrixStats memoise mgcv mime nlme nnet openssl pkgconfig png R6 rappdirs RColorBrewer rlang rmarkdown rpart RSQLite rstudioapi S4Arrays S4Vectors S7 sass scales Seqinfo snow SparseArray statmod stringi stringr SummarizedExperiment survival sva sys tinytex vctrs viridisLite withr xfun XML xtable XVector yaml

The qsmooth user's guide

Rendered fromqsmooth.Rmdusingknitr::rmarkdown

Last update: 2021-06-25
Started: 2019-03-29

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
qsmooth	qsmooth
the qsmooth class	qsmooth-class
Generic function that returns the qsmooth normalized data	qsmoothData qsmoothData,qsmooth-method
qsmoothGC	qsmoothGC
Plot weights from 'qsmooth' function.	qsmoothPlotWeights
Generic function that returns the qsmooth weights	qsmoothWeights qsmoothWeights,qsmooth-method
qstats	qstats