Package: qsmooth 1.29.0

Stephanie C. Hicks

qsmooth: Smooth quantile normalization

Smooth quantile normalization is a generalization of quantile normalization, which is average of the two types of assumptions about the data generation process: quantile normalization and quantile normalization between groups.

Authors:Stephanie C. Hicks [aut, cre], Kwame Okrah [aut], Koen Van den Berge [ctb], Hector Corrada Bravo [aut], Rafael Irizarry [aut]

qsmooth_1.29.0.tar.gz
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qsmooth_1.29.0.tgz(r-4.6-any)qsmooth_1.29.0.tgz(r-4.5-any)
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qsmooth_1.29.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
qsmooth/json (API)

# Install 'qsmooth' in R:
install.packages('qsmooth', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:qsmooth-1.29.0(bioc 3.24)qsmooth-1.28.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

normalizationpreprocessingmultiplecomparisonmicroarraysequencingrnaseqbatcheffect

5.41 score 1 packages 287 scripts 590 downloads 3 mentions 6 exports 108 dependencies

Last updated from:c0da2a33d9. Checks:1 NOTE, 7 WARNING, 1 ERROR, 1 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksNOTE224
linux-develWARNING423
source / vignettesERROR324
linux-releaseWARNING353
macos-releaseWARNING222
macos-oldrelWARNING187
windows-develWARNING290
windows-releaseWARNING299
windows-oldrelWARNING302
wasm-releaseOK169

Exports:qsmoothqsmoothDataqsmoothGCqsmoothPlotWeightsqsmoothWeightsqstats

Dependencies:abindannotateAnnotationDbiaskpassbackportsbase64encBHBiobaseBiocBaseUtilsBiocGenericsBiocParallelBiostringsbitbit64blobbslibcachemcheckmatecliclustercodetoolscolorspacecpp11crayoncurldata.tableDBIDelayedArraydigestedgeRevaluatefarverfastmapfontawesomeforeignformatRFormulafsfutile.loggerfutile.optionsgenefiltergenericsGenomicRangesggplot2gluegridExtragtablehighrHmischtmlTablehtmltoolshtmlwidgetshttrIRangesisobandjquerylibjsonliteKEGGRESTknitrlabelinglambda.rlatticelifecyclelimmamagrittrMatrixMatrixGenericsmatrixStatsmemoisemgcvmimenlmennetopensslpkgconfigpngR6rappdirsRColorBrewerrlangrmarkdownrpartRSQLiterstudioapiS4ArraysS4VectorsS7sassscalesSeqinfosnowSparseArraystatmodstringistringrSummarizedExperimentsurvivalsvasystinytexvctrsviridisLitewithrxfunXMLxtableXVectoryaml

Readme and manuals

Help Manual

Help pageTopics
qsmoothqsmooth
the qsmooth classqsmooth-class
Generic function that returns the qsmooth normalized dataqsmoothData qsmoothData,qsmooth-method
qsmoothGCqsmoothGC
Plot weights from 'qsmooth' function.qsmoothPlotWeights
Generic function that returns the qsmooth weightsqsmoothWeights qsmoothWeights,qsmooth-method
qstatsqstats