Package: qsmooth 1.29.0

Stephanie C. Hicks

qsmooth: Smooth quantile normalization

Smooth quantile normalization is a generalization of quantile normalization, which is average of the two types of assumptions about the data generation process: quantile normalization and quantile normalization between groups.

Authors:Stephanie C. Hicks [aut, cre], Kwame Okrah [aut], Koen Van den Berge [ctb], Hector Corrada Bravo [aut], Rafael Irizarry [aut]

qsmooth_1.29.0.tar.gz
qsmooth_1.29.0.zip(r-4.7)qsmooth_1.29.0.zip(r-4.6)qsmooth_1.29.0.zip(r-4.5)
qsmooth_1.29.0.tgz(r-4.6-any)qsmooth_1.29.0.tgz(r-4.5-any)
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qsmooth_1.29.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
qsmooth/json (API)
NEWS

# Install 'qsmooth' in R:
install.packages('qsmooth', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:qsmooth-1.29.0(bioc 3.24)qsmooth-1.28.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

normalizationpreprocessingmultiplecomparisonmicroarraysequencingrnaseqbatcheffect

5.91 score 1 packages 91 scripts 386 downloads 3 mentions 6 exports 108 dependencies

Last updated from:c0da2a33d9. Checks:1 NOTE, 7 WARNING, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksNOTE246
linux-devel-x86_64WARNING409
source / vignettesOK351
linux-release-x86_64WARNING425
macos-release-arm64WARNING191
macos-oldrel-arm64WARNING238
windows-develWARNING357
windows-releaseWARNING327
windows-oldrelWARNING330
wasm-releaseOK204

Exports:qsmoothqsmoothDataqsmoothGCqsmoothPlotWeightsqsmoothWeightsqstats

Dependencies:abindannotateAnnotationDbiaskpassbackportsbase64encBHBiobaseBiocGenericsBiocParallelBiostringsbitbit64blobbslibcachemcheckmatecliclustercodetoolscolorspacecpp11crayoncurldata.tableDBIDelayedArraydigestedgeRevaluatefarverfastmapfontawesomeforeignformatRFormulafsfutile.loggerfutile.optionsgenefiltergenericsGenomicRangesggplot2gluegridExtragtablehighrHmischtmlTablehtmltoolshtmlwidgetshttrIRangesisobandjquerylibjsonliteKEGGRESTknitrlabelinglambda.rlatticelifecyclelimmalocfitmagrittrMatrixMatrixGenericsmatrixStatsmemoisemgcvmimenlmennetopensslpkgconfigpngR6rappdirsRColorBrewerrlangrmarkdownrpartRSQLiterstudioapiS4ArraysS4VectorsS7sassscalesSeqinfosnowSparseArraystatmodstringistringrSummarizedExperimentsurvivalsvasystinytexvctrsviridisLitewithrxfunXMLxtableXVectoryaml

The qsmooth user's guide

Stephanie C. Hicks, Kwame Okrah, Joseph Paulson, John Quackenbush, Rafael A. Irizarry, Hector Corrada-Bravo

Rendered fromqsmooth.Rmdusingknitr::rmarkdownon Jun 02 2026.

Last update: 2021-06-25
Started: 2019-03-29

Readme and manuals

Help Manual

Help pageTopics
qsmoothqsmooth
the qsmooth classqsmooth-class
Generic function that returns the qsmooth normalized dataqsmoothData qsmoothData,qsmooth-method
qsmoothGCqsmoothGC
Plot weights from 'qsmooth' function.qsmoothPlotWeights
Generic function that returns the qsmooth weightsqsmoothWeights qsmoothWeights,qsmooth-method
qstatsqstats