The qsmooth package is described in: Hicks SC, Okrah K, Paulson JN, Quackenbush J, Irizarry RA, Corrado Bravo H (2018). “Smooth quantile normalization.” _Biostatistics_, *19*(2). A BibTeX entry for LaTeX users is @Article{qsmooth, author = {Stephanie C. Hicks and Kwame Okrah and Joseph N. Paulson and John Quackenbush and Rafael A. Irizarry and Hector {Corrado Bravo}}, title = {Smooth quantile normalization}, journal = {Biostatistics}, year = {2018}, volume = {19}, number = {2}, pubmed = {29036413}, } The qsmoothGC functionlity is described in: Van den Berge K, Chou H, Roux de Bezieux H, Street K, Risso D, Ngai J, Dudoit S (2021). “Normalization benchmark of ATAC-seq datasets shows the importance of accounting for GC-content effects.” _bioRxiv_. A BibTeX entry for LaTeX users is @Article{qsmoothGC, author = {Koen {Van den Berge} and Hsin-Jung Chou and Hector {Roux de Bezieux} and Kelly Street and Davide Risso and John Ngai and Sandrine Dudoit}, title = {Normalization benchmark of ATAC-seq datasets shows the importance of accounting for GC-content effects}, journal = {bioRxiv}, year = {2021}, }