Package: qpcrNorm 1.65.0
Jessica Mar
qpcrNorm: Data-driven normalization strategies for high-throughput qPCR data.
The package contains functions to perform normalization of high-throughput qPCR data. Basic functions for processing raw Ct data plus functions to generate diagnostic plots are also available.
Authors:
qpcrNorm_1.65.0.tar.gz
qpcrNorm_1.65.0.zip(r-4.5)qpcrNorm_1.65.0.zip(r-4.4)qpcrNorm_1.65.0.zip(r-4.3)
qpcrNorm_1.65.0.tgz(r-4.4-any)qpcrNorm_1.65.0.tgz(r-4.3-any)
qpcrNorm_1.65.0.tar.gz(r-4.5-noble)qpcrNorm_1.65.0.tar.gz(r-4.4-noble)
qpcrNorm_1.65.0.tgz(r-4.4-emscripten)qpcrNorm_1.65.0.tgz(r-4.3-emscripten)
qpcrNorm.pdf |qpcrNorm.html✨
qpcrNorm/json (API)
# Install 'qpcrNorm' in R: |
install.packages('qpcrNorm', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
- qpcrBatch.object - QpcrBatch instance qpcrBatch.object
On BioConductor:qpcrNorm-1.65.0(bioc 3.21)qpcrNorm-1.64.0(bioc 3.20)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 months agofrom:434cba8e5e. Checks:OK: 1 NOTE: 6. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 30 2024 |
R-4.5-win | NOTE | Nov 30 2024 |
R-4.5-linux | NOTE | Nov 30 2024 |
R-4.4-win | NOTE | Nov 30 2024 |
R-4.4-mac | NOTE | Nov 30 2024 |
R-4.3-win | NOTE | Nov 30 2024 |
R-4.3-mac | NOTE | Nov 30 2024 |
Exports:calcCVctQcmatrixByPlatenormQpcrHouseKeepingGenesnormQpcrQuantilenormQpcrRankInvariantplotVarMeanreadQpcrreadQpcrBatchwriteQpcr
Dependencies:affyaffyioBiobaseBiocGenericsBiocManagergenericslimmapreprocessCorestatmodzlibbioc
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Calculates the Average Gene-Specific Coefficient of Variation | calcCV |
Function for Housekeeping Gene Normalization of qPCR Data. | normQpcrHouseKeepingGenes |
Function for Quantile Normalization of qPCR Data. | normQpcrQuantile |
Function for Rank-Invariant Set Normalization for qPCR Data. | normQpcrRankInvariant |
Constructs scatter plot to compare the effects of two normalization algorithms on a qPCR dataset. | plotVarMean |
Class qpcrBatch | normalize, qpcrBatch-class qpcrBatch qpcrBatch-class |
qpcrBatch instance qpcrBatch.object | qpcrBatch.object |
Data Input Function for a Single qPCR Experiment. | readQpcr |
Data Input Function for a Batch of qPCR Experiments. | readQpcrBatch |
Writes qpcrBatch object out to a File. | writeQpcr |