Introduction | Preprocessing Raw qPCR Data | Normalizing qPCR Data | Assessing Performance | More Info | Acknowledgements | References
Package: qpcrNorm 1.71.0
Jessica Mar
qpcrNorm: Data-driven normalization strategies for high-throughput qPCR data.
The package contains functions to perform normalization of high-throughput qPCR data. Basic functions for processing raw Ct data plus functions to generate diagnostic plots are also available.
Authors:
qpcrNorm_1.71.0.tar.gz
qpcrNorm_1.71.0.zip(r-4.7)qpcrNorm_1.71.0.zip(r-4.6)qpcrNorm_1.71.0.zip(r-4.5)
qpcrNorm_1.71.0.tgz(r-4.6-any)qpcrNorm_1.71.0.tgz(r-4.5-any)
qpcrNorm_1.71.0.tar.gz(r-4.7-any)qpcrNorm_1.71.0.tar.gz(r-4.6-any)
qpcrNorm_1.71.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
qpcrNorm/json (API)
| # Install 'qpcrNorm' in R: |
| install.packages('qpcrNorm', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
- qpcrBatch.object - QpcrBatch instance qpcrBatch.object
On BioConductor:qpcrNorm-1.71.0(bioc 3.24)qpcrNorm-1.70.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:052965ac5b. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 140 | ||
| linux-devel-x86_64 | NOTE | 146 | ||
| source / vignettes | OK | 161 | ||
| linux-release-x86_64 | NOTE | 201 | ||
| macos-release-arm64 | NOTE | 80 | ||
| macos-oldrel-arm64 | NOTE | 76 | ||
| windows-devel | NOTE | 98 | ||
| windows-release | NOTE | 94 | ||
| windows-oldrel | NOTE | 76 | ||
| wasm-release | OK | 103 |
Exports:calcCVctQcmatrixByPlatenormQpcrHouseKeepingGenesnormQpcrQuantilenormQpcrRankInvariantplotVarMeanreadQpcrreadQpcrBatchwriteQpcr
Dependencies:affyaffyioBiobaseBiocGenericsBiocManagergenericslimmapreprocessCorestatmod
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Calculates the Average Gene-Specific Coefficient of Variation | calcCV |
| Function for Housekeeping Gene Normalization of qPCR Data. | normQpcrHouseKeepingGenes |
| Function for Quantile Normalization of qPCR Data. | normQpcrQuantile |
| Function for Rank-Invariant Set Normalization for qPCR Data. | normQpcrRankInvariant |
| Constructs scatter plot to compare the effects of two normalization algorithms on a qPCR dataset. | plotVarMean |
| Class qpcrBatch | normalize, qpcrBatch-class qpcrBatch qpcrBatch-class |
| qpcrBatch instance qpcrBatch.object | qpcrBatch.object |
| Data Input Function for a Single qPCR Experiment. | readQpcr |
| Data Input Function for a Batch of qPCR Experiments. | readQpcrBatch |
| Writes qpcrBatch object out to a File. | writeQpcr |