{
  "_id": "6a493d26a19c9318096e7448",
  "Package": "qpcrNorm",
  "Type": "Package",
  "Title": "Data-driven normalization strategies for high-throughput qPCR\ndata.",
  "Version": "1.71.0",
  "Date": "2009-11-08",
  "Author": "Jessica Mar",
  "Maintainer": "Jessica Mar <jess@jimmy.harvard.edu>",
  "Description": "The package contains functions to perform normalization of\nhigh-throughput qPCR data. Basic functions for processing raw\nCt data plus functions to generate diagnostic plots are also\navailable.",
  "License": "LGPL (>= 2)",
  "Collate": "qpcrNormsource.R",
  "biocViews": "Preprocessing, GeneExpression",
  "Config/pak/sysreqs": "zlib1g-dev",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:33:50 UTC",
  "RemoteUrl": "https://github.com/bioc/qpcrNorm",
  "RemoteRef": "HEAD",
  "RemoteSha": "052965ac5bc3278f5189fcb3de7b8e4e1b88747f",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-07-04 01:16:27 UTC",
    "User": "root"
  },
  "_user": "bioc",
  "_type": "src",
  "_file": "qpcrNorm_1.71.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/d3004eebd99c36ba9a7d007b1d58970ddb35908cd9bef30326002201fd1c00e1",
  "_filesize": 606956,
  "_sha256": "d3004eebd99c36ba9a7d007b1d58970ddb35908cd9bef30326002201fd1c00e1",
  "_expires": "2026-10-12T17:04:36.000Z",
  "_created": "2026-07-04T01:16:27.000Z",
  "_published": "2026-07-04T17:04:38.420Z",
  "_bioccheck": {
    "error": 2,
    "warning": 7,
    "note": 13
  },
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/28690413427",
  "_status": "success",
  "_upstream": "https://github.com/bioc/qpcrNorm",
  "_commit": {
    "id": "052965ac5bc3278f5189fcb3de7b8e4e1b88747f",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n",
    "time": 1777379630
  },
  "_maintainer": {
    "name": "Jessica Mar",
    "email": "jess@jimmy.harvard.edu"
  },
  "_distro": "resolute",
  "_jobs": [
    {
      "job": 85150604626,
      "time": 140,
      "config": "bioc-checks",
      "r": "4.6.1",
      "check": "ERROR",
      "artifact": "8076981730"
    },
    {
      "job": 85150604612,
      "time": 146,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "8076982198"
    },
    {
      "job": 85150604630,
      "time": 201,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "8076988872"
    },
    {
      "job": 85150604516,
      "time": 76,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "8076974291"
    },
    {
      "job": 85150604562,
      "time": 80,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "8076974554"
    },
    {
      "job": 85150604475,
      "time": 161,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8076964260"
    },
    {
      "job": 85150604481,
      "time": 103,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8076977442"
    },
    {
      "job": 85150604544,
      "time": 98,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "8076976826"
    },
    {
      "job": 85150604559,
      "time": 76,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "8076974183"
    },
    {
      "job": 85150604621,
      "time": 94,
      "config": "windows-release",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "8076976171"
    }
  ],
  "_registered": true,
  "_dependencies": [
    {
      "package": "methods",
      "role": "Depends"
    },
    {
      "package": "Biobase",
      "role": "Depends"
    },
    {
      "package": "limma",
      "role": "Depends"
    },
    {
      "package": "affy",
      "role": "Depends"
    }
  ],
  "_owner": "bioc",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 2
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.71.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.70.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "preprocessing",
    "geneexpression"
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "followers": 445,
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_mentions": 2,
  "_searchresults": 4,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/qpcrNorm.html",
    "manual.pdf"
  ],
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "calcCV",
    "ctQc",
    "matrixByPlate",
    "normQpcrHouseKeepingGenes",
    "normQpcrQuantile",
    "normQpcrRankInvariant",
    "plotVarMean",
    "readQpcr",
    "readQpcrBatch",
    "writeQpcr"
  ],
  "_datasets": [
    {
      "name": "qpcrBatch.object",
      "title": "qpcrBatch instance qpcrBatch.object",
      "object": "qpcrBatch.object",
      "file": "qpcrBatch.object.rda",
      "class": [
        "qpcrBatch"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    }
  ],
  "_help": [
    {
      "page": "calcCV",
      "title": "Calculates the Average Gene-Specific Coefficient of Variation",
      "topics": [
        "calcCV"
      ]
    },
    {
      "page": "normQpcrHouseKeepingGenes",
      "title": "Function for Housekeeping Gene Normalization of qPCR Data.",
      "topics": [
        "normQpcrHouseKeepingGenes"
      ]
    },
    {
      "page": "normQpcrQuantile",
      "title": "Function for Quantile Normalization of qPCR Data.",
      "topics": [
        "normQpcrQuantile"
      ]
    },
    {
      "page": "normQpcrRankInvariant",
      "title": "Function for Rank-Invariant Set Normalization for qPCR Data.",
      "topics": [
        "normQpcrRankInvariant"
      ]
    },
    {
      "page": "plotVarMean",
      "title": "Constructs scatter plot to compare the effects of two normalization algorithms on a qPCR dataset.",
      "topics": [
        "plotVarMean"
      ]
    },
    {
      "page": "qpcrBatch-class",
      "title": "Class qpcrBatch",
      "topics": [
        "normalize, qpcrBatch-class",
        "qpcrBatch",
        "qpcrBatch-class"
      ]
    },
    {
      "page": "qpcrBatch.object",
      "title": "qpcrBatch instance qpcrBatch.object",
      "topics": [
        "qpcrBatch.object"
      ]
    },
    {
      "page": "readQpcr",
      "title": "Data Input Function for a Single qPCR Experiment.",
      "topics": [
        "readQpcr"
      ]
    },
    {
      "page": "readQpcrBatch",
      "title": "Data Input Function for a Batch of qPCR Experiments.",
      "topics": [
        "readQpcrBatch"
      ]
    },
    {
      "page": "writeQpcr",
      "title": "Writes qpcrBatch object out to a File.",
      "topics": [
        "writeQpcr"
      ]
    }
  ],
  "_rundeps": [
    "affy",
    "affyio",
    "Biobase",
    "BiocGenerics",
    "BiocManager",
    "generics",
    "limma",
    "preprocessCore",
    "statmod"
  ],
  "_vignettes": [
    {
      "source": "qpcrNorm.Rnw",
      "filename": "qpcrNorm.pdf",
      "title": "qPCR Normalization Example",
      "engine": "utils::Sweave",
      "headings": [
        "Introduction",
        "Preprocessing Raw qPCR Data",
        "Normalizing qPCR Data",
        "Assessing Performance",
        "More Info",
        "Acknowledgements",
        "References"
      ],
      "created": "2013-11-01 20:08:08",
      "modified": "2013-11-01 20:08:08",
      "commits": 1
    }
  ],
  "_score": 3.6020599913279625,
  "_indexed": true,
  "_nocasepkg": "qpcrnorm",
  "_universes": [
    "bioc"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.71.0",
      "date": "2026-07-04T01:18:50.000Z",
      "distro": "resolute",
      "commit": "052965ac5bc3278f5189fcb3de7b8e4e1b88747f",
      "fileid": "https://r2.ropensci.org/f9c707409d76f95bf3769b5c3a64fcbda115ae67f0ae559ba903d1c838241c50",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28690413427"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.71.0",
      "date": "2026-07-04T01:19:45.000Z",
      "distro": "resolute",
      "commit": "052965ac5bc3278f5189fcb3de7b8e4e1b88747f",
      "fileid": "https://r2.ropensci.org/b2578cf9b1a818d47e27669e17ca3acad443241dd2a8027212f751b1821a1f3a",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28690413427"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.71.0",
      "date": "2026-07-04T01:17:52.000Z",
      "commit": "052965ac5bc3278f5189fcb3de7b8e4e1b88747f",
      "fileid": "https://r2.ropensci.org/b84e4319925fbe39adbc7f207a2025771566c6a29fb885e3bdc8faa9bbac67e8",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28690413427"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.71.0",
      "date": "2026-07-04T01:17:54.000Z",
      "commit": "052965ac5bc3278f5189fcb3de7b8e4e1b88747f",
      "fileid": "https://r2.ropensci.org/768f4c712d8420dce5d4060fd85b0c66ba063f8bdb5dbd1ec261147799ad77a7",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28690413427"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.71.0",
      "date": "2026-07-04T01:18:29.000Z",
      "commit": "052965ac5bc3278f5189fcb3de7b8e4e1b88747f",
      "fileid": "https://r2.ropensci.org/dd2f23ef8164bb1048bc193ff1faf9af7815842096867eb3ef9e1ec598957186",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28690413427"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.71.0",
      "date": "2026-07-04T01:17:48.000Z",
      "commit": "052965ac5bc3278f5189fcb3de7b8e4e1b88747f",
      "fileid": "https://r2.ropensci.org/f407f3a2f6587f76e432bf0b9197563737a9365d3e4d094a23c54c6d8bb0b60c",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28690413427"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.71.0",
      "date": "2026-07-04T01:17:39.000Z",
      "commit": "052965ac5bc3278f5189fcb3de7b8e4e1b88747f",
      "fileid": "https://r2.ropensci.org/cdd610e68b99e11c7037991563d0eb6c5b58dd16d27e8e66e01f5a5be0a4156e",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28690413427"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.71.0",
      "date": "2026-07-04T01:17:54.000Z",
      "commit": "052965ac5bc3278f5189fcb3de7b8e4e1b88747f",
      "fileid": "https://r2.ropensci.org/c46b7d1883d623739946efd8713bfe831bd72d680baeca6f95761ebba30f97dd",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28690413427"
    }
  ]
}