{ "_id": "6a1ab0011d7bb097a09d554b", "Package": "qpcrNorm", "Type": "Package", "Title": "Data-driven normalization strategies for high-throughput qPCR\ndata.", "Version": "1.71.0", "Date": "2009-11-08", "Author": "Jessica Mar", "Maintainer": "Jessica Mar ", "Description": "The package contains functions to perform normalization of\nhigh-throughput qPCR data. Basic functions for processing raw\nCt data plus functions to generate diagnostic plots are also\navailable.", "License": "LGPL (>= 2)", "Collate": "qpcrNormsource.R", "biocViews": "Preprocessing, GeneExpression", "Config/pak/sysreqs": "zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:33:50 UTC", "RemoteUrl": "https://github.com/bioc/qpcrNorm", "RemoteRef": "HEAD", "RemoteSha": "052965ac5bc3278f5189fcb3de7b8e4e1b88747f", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-30 07:04:47 UTC", "User": "root" }, "MD5sum": "45b22dbaa574d9fecf29d3ea0ea93e28", "_user": "bioc", "_type": "src", "_file": "qpcrNorm_1.71.0.tar.gz", "_fileid": "b10a24882ace929367d2c007b4e82d71ac0a3c9ed12d450d87fc7c793c82e84e", "_filesize": 605747, "_sha256": "b10a24882ace929367d2c007b4e82d71ac0a3c9ed12d450d87fc7c793c82e84e", "_created": "2026-05-30T07:04:47.000Z", "_published": "2026-05-30T09:38:09.532Z", "_jobs": [ { "job": 78632259089, "time": 137, "config": "bioc-checks", "r": "4.6.0", "check": "ERROR", "artifact": "7306324275" }, { "job": 78632259080, "time": 170, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "7306327916" }, { "job": 78632259076, "time": 206, "config": "linux-release-x86_64", "r": "4.6.0", "check": "NOTE", "artifact": "7306332030" }, { "job": 78632259079, "time": 104, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "7307183434" }, { "job": 78632259062, "time": 79, "config": "macos-release-arm64", "r": "4.6.0", "check": "NOTE", "artifact": "7307180393" }, { "job": 78632100998, "time": 161, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7306307456" }, { "job": 78632259044, "time": 94, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7306319139" }, { "job": 78632259097, "time": 133, "config": "windows-devel", "r": "4.7.0", "check": "NOTE", "artifact": "7306323776" }, { "job": 78632259094, "time": 74, "config": "windows-oldrel", "r": "4.5.3", "check": "NOTE", "artifact": "7306316722" }, { "job": 78632259084, "time": 79, "config": "windows-release", "r": "4.6.0", "check": "NOTE", "artifact": "7306317241" } ], "_bioccheck": { "error": 2, "warning": 6, "note": 14 }, "_buildurl": "https://github.com/r-universe/bioc/actions/runs/26677551692", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/bioc/qpcrNorm", "_commit": { "id": "052965ac5bc3278f5189fcb3de7b8e4e1b88747f", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777379630 }, "_maintainer": { "name": "Jessica Mar", "email": "jess@jimmy.harvard.edu" }, "_distro": "noble", "_registered": true, "_dependencies": [ { "package": "methods", "role": "Depends" }, { "package": "Biobase", "role": "Depends" }, { "package": "limma", "role": "Depends" }, { "package": "affy", "role": "Depends" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.71.0", "bioc": "3.24" }, { "branch": "release", "version": "1.70.0", "bioc": "3.23" } ], "_topics": [ "preprocessing", "geneexpression" ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 363, "source": "https://www.bioconductor.org/packages/stats/bioc/qpcrNorm" }, "_mentions": 2, "_searchresults": 9, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/qpcrNorm.html", "manual.pdf" ], "_realowner": "bioc", "_cranurl": false, "_exports": [ "calcCV", "ctQc", "matrixByPlate", "normQpcrHouseKeepingGenes", "normQpcrQuantile", "normQpcrRankInvariant", "plotVarMean", "readQpcr", "readQpcrBatch", "writeQpcr" ], "_datasets": [ { "name": "qpcrBatch.object", "title": "qpcrBatch instance qpcrBatch.object", "object": "qpcrBatch.object", "file": "qpcrBatch.object.rda", "class": [ "qpcrBatch" ], "fields": [], "table": false, "tojson": false } ], "_help": [ { "page": "calcCV", "title": "Calculates the Average Gene-Specific Coefficient of Variation", "topics": [ "calcCV" ] }, { "page": "normQpcrHouseKeepingGenes", "title": "Function for Housekeeping Gene Normalization of qPCR Data.", "topics": [ "normQpcrHouseKeepingGenes" ] }, { "page": "normQpcrQuantile", "title": "Function for Quantile Normalization of qPCR Data.", "topics": [ "normQpcrQuantile" ] }, { "page": "normQpcrRankInvariant", "title": "Function for Rank-Invariant Set Normalization for qPCR Data.", "topics": [ "normQpcrRankInvariant" ] }, { "page": "plotVarMean", "title": "Constructs scatter plot to compare the effects of two normalization algorithms on a qPCR dataset.", "topics": [ "plotVarMean" ] }, { "page": "qpcrBatch-class", "title": "Class qpcrBatch", "topics": [ "normalize, qpcrBatch-class", "qpcrBatch", "qpcrBatch-class" ] }, { "page": "qpcrBatch.object", "title": "qpcrBatch instance qpcrBatch.object", "topics": [ "qpcrBatch.object" ] }, { "page": "readQpcr", "title": "Data Input Function for a Single qPCR Experiment.", "topics": [ "readQpcr" ] }, { "page": "readQpcrBatch", "title": "Data Input Function for a Batch of qPCR Experiments.", "topics": [ "readQpcrBatch" ] }, { "page": "writeQpcr", "title": "Writes qpcrBatch object out to a File.", "topics": [ "writeQpcr" ] } ], "_rundeps": [ "affy", "affyio", "Biobase", "BiocGenerics", "BiocManager", "generics", "limma", "preprocessCore", "statmod" ], "_vignettes": [ { "source": "qpcrNorm.Rnw", "filename": "qpcrNorm.pdf", "title": "qPCR Normalization Example", "engine": "utils::Sweave", "headings": [], "created": "2013-11-01 20:08:08", "modified": "2013-11-01 20:08:08", "commits": 1 } ], "_score": 3.6020599913279625, "_indexed": true, "_nocasepkg": "qpcrnorm", "_universes": [ "bioc" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.71.0", "date": "2026-05-30T07:07:35.000Z", "distro": "noble", "commit": "052965ac5bc3278f5189fcb3de7b8e4e1b88747f", "fileid": "259397562e553bf0c04d612e0f5b4b2ac863649725e6c00ca999952d3bf662c9", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26677551692" }, { "r": "4.6.0", "os": "linux", "version": "1.71.0", "date": "2026-05-30T07:08:12.000Z", "distro": "noble", "commit": "052965ac5bc3278f5189fcb3de7b8e4e1b88747f", "fileid": "5262310c2b47faa34cf964abddc635033079b641fd3fc7ced12d5f312a214c70", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26677551692" }, { "r": "4.5.3", "os": "mac", "version": "1.71.0", "date": "2026-05-30T09:29:06.000Z", "commit": "052965ac5bc3278f5189fcb3de7b8e4e1b88747f", "fileid": "824d4d512c0abfcb95177d94b691fda858396d62d64b67406ea9d97e5f8c16eb", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26677551692" }, { "r": "4.6.0", "os": "mac", "version": "1.71.0", "date": "2026-05-30T09:28:38.000Z", "commit": "052965ac5bc3278f5189fcb3de7b8e4e1b88747f", "fileid": "6fede6aae631cd6293660353a0758ae9647cdad2d6c894379aabf996fa7a1a44", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26677551692" }, { "r": "4.6.0", "os": "wasm", "version": "1.71.0", "date": "2026-05-30T07:06:45.000Z", "commit": "052965ac5bc3278f5189fcb3de7b8e4e1b88747f", "fileid": "62e9411b4e1933b31fe4bb34e3433311918db7364bb3919afd470c772491ba03", "status": "success", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26677551692" }, { "r": "4.7.0", "os": "win", "version": "1.71.0", "date": "2026-05-30T07:06:06.000Z", "commit": "052965ac5bc3278f5189fcb3de7b8e4e1b88747f", "fileid": "0d416c2ec50a900ef73f0b2669ad85e23865f0dd3d606637b9730453a24190eb", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26677551692" }, { "r": "4.5.3", "os": "win", "version": "1.71.0", "date": "2026-05-30T07:05:59.000Z", "commit": "052965ac5bc3278f5189fcb3de7b8e4e1b88747f", "fileid": "5a920c6f76ec467c96adbf64dcae07c32a098ed61e653541a500af885fd184e0", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26677551692" }, { "r": "4.6.0", "os": "win", "version": "1.71.0", "date": "2026-05-30T07:06:02.000Z", "commit": "052965ac5bc3278f5189fcb3de7b8e4e1b88747f", "fileid": "25441917fdb63122ae66d1265022fda5eed30d5a8207cdd79c977dea41ded42b", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26677551692" } ] }