Package: qcmetrics 1.45.0

Laurent Gatto

qcmetrics: A Framework for Quality Control

The package provides a framework for generic quality control of data. It permits to create, manage and visualise individual or sets of quality control metrics and generate quality control reports in various formats.

Authors:Laurent Gatto [aut, cre]

qcmetrics_1.45.0.tar.gz
qcmetrics_1.45.0.zip(r-4.5)qcmetrics_1.45.0.zip(r-4.4)qcmetrics_1.45.0.zip(r-4.3)
qcmetrics_1.45.0.tgz(r-4.4-any)qcmetrics_1.45.0.tgz(r-4.3-any)
qcmetrics_1.45.0.tar.gz(r-4.5-noble)qcmetrics_1.45.0.tar.gz(r-4.4-noble)
qcmetrics_1.45.0.tgz(r-4.4-emscripten)qcmetrics_1.45.0.tgz(r-4.3-emscripten)
qcmetrics.pdf |qcmetrics.html✨
qcmetrics/json (API)

# Install 'qcmetrics' in R:
install.packages('qcmetrics', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/lgatto/qcmetrics/issues

Datasets:
  • psm - 15N example data

On BioConductor:qcmetrics-1.45.0(bioc 3.21)qcmetrics-1.44.0(bioc 3.20)

immunooncologysoftwarequalitycontrolproteomicsmicroarraymassspectrometryvisualizationreportwriting

6.21 score 2 stars 2 packages 237 downloads 1 mentions 31 exports 13 dependencies

Last updated 23 days agofrom:d4b8b9ebc1. Checks:OK: 3 WARNING: 4. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 06 2024
R-4.5-winWARNINGNov 06 2024
R-4.5-linuxWARNINGNov 06 2024
R-4.4-winWARNINGNov 06 2024
R-4.4-macOKNov 06 2024
R-4.3-winWARNINGNov 06 2024
R-4.3-macOKNov 06 2024

Exports:as.data.frame.QcMetricsdescriptiondescription<-example_reportsmdatamdata<-metadatametadata<-n15qcnamename<-plotplot<-printQc2RmdQc2TexQc2Tex2Qc2Tex3qcdataqcdata<-qcenvqcenv<-QcMetadataQcMetricQcMetricsqcReportqcshowshowshow<-statusstatus<-

Dependencies:BiobaseBiocGenericsdigestevaluategenericshighrknitrpanderRcppS4Vectorsxfunxtableyaml

Index file for the qcmetrics package vignette

Laurent Gatto

Rendered fromqcmetrics.Rmdusingknitr::rmarkdownon Nov 06 2024.

Last update: 2024-02-03
Started: 2020-11-26

Readme and manuals

Help Manual

Help pageTopics
N15 labelling QC reportn15qc
15N example datan15psm psm
'QcMetric' sectioning functionsQc2Rmd Qc2Tex Qc2Tex2 Qc2Tex3 qcto
The '"QcMetadata"' classclass:QcMetadata length,QcMetadata-method mdata,QcMetadata-method mdata<-,QcMetadata,list-method metadata,QcMetadata-method metadata<-,QcMetadata,list-method names,QcMetadata-method names<-,QcMetadata,character-method print,QcMetadata-method QcMetadata QcMetadata-class show,QcMetadata-method [,QcMetadata-method [[,QcMetadata-method
The '"QcMetric"' class for QC itemsclass:QcMetric description,QcMetric-method description<-,QcMetric,character-method name,QcMetric-method name<-,QcMetric,character-method plot,QcMetric,missing-method plot<- plot<-,QcMetric,function-method qcdata qcdata,QcMetric,character-method qcdata,QcMetric,missing-method qcdata<- qcdata<-,QcMetric,ANY-method qcenv qcenv,QcMetric-method qcenv<- qcenv<-,QcMetric,environment-method QcMetric QcMetric-class qcshow show,QcMetric-method show<- show<-,QcMetric,function-method status status,QcMetric-method status<- status<-,QcMetric,logical-method
The '"QcMetrics"' class for collections of QC itemsas.data.frame.QcMetrics class:QcMetrics length,QcMetrics-method mdata mdata,QcMetrics-method mdata<- mdata<-,QcMetrics,list-method mdata<-,QcMetrics,QcMetadata-method metadata metadata,QcMetrics-method metadata<- metadata<-,QcMetrics,list-method metadata<-,QcMetrics,QcMetadata-method name name,QcMetrics-method name<- name<-,QcMetrics,character-method qcdata,QcMetrics,ANY-method qcdata<-,QcMetrics,list-method QcMetrics QcMetrics-class show,QcMetrics-method status,QcMetrics-method status<-,QcMetrics,logical-method [,QcMetrics-method [[,QcMetrics-method
Automatic report generationexample_reports qcReport qcReport,QcMetrics-method qcReport-methods reporting reporting_html reporting_pdf reporting_rmd reporting_tex