Package: qcmetrics 1.51.0

Laurent Gatto

qcmetrics: A Framework for Quality Control

The package provides a framework for generic quality control of data. It permits to create, manage and visualise individual or sets of quality control metrics and generate quality control reports in various formats.

Authors:Laurent Gatto [aut, cre]

qcmetrics_1.51.0.tar.gz
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manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
qcmetrics/json (API)

# Install 'qcmetrics' in R:

install.packages('qcmetrics', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/lgatto/qcmetrics/issues

Datasets:

psm - 15N example data

On BioConductor:qcmetrics-1.51.0(bioc 3.24)qcmetrics-1.50.0(bioc 3.23)

immunooncology software qualitycontrol proteomics microarray massspectrometry visualization reportwriting

6.03 score 2 stars 2 packages 1 scripts 1 mentions 31 exports 13 dependencies

Last updated from:667351f562. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.

Target	Result	Time
bioc-checks	ERROR	171
linux-devel-x86_64	NOTE	228
source / vignettes	OK	241
linux-release-x86_64	NOTE	222
macos-release-arm64	NOTE	143
macos-oldrel-arm64	NOTE	101
windows-devel	NOTE	138
windows-release	NOTE	138
windows-oldrel	NOTE	140
wasm-release	OK	176

Exports:as.data.frame.QcMetrics description description<-example_reports mdata mdata<-metadata metadata<-n15qc name name<-plot plot<-print Qc2Rmd Qc2Tex Qc2Tex2 Qc2Tex3 qcdata qcdata<-qcenv qcenv<-QcMetadata QcMetric QcMetrics qcReport qcshow show show<-status status<-

Dependencies:Biobase BiocGenerics digest evaluate generics highr knitr pander Rcpp S4Vectors xfun xtable yaml

Index file for the qcmetrics package vignette

Rendered fromqcmetrics.Rmdusingknitr::rmarkdown

Last update: 2024-02-03
Started: 2020-11-26

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
N15 labelling QC report	n15qc
15N example data	n15psm psm
'QcMetric' sectioning functions	Qc2Rmd Qc2Tex Qc2Tex2 Qc2Tex3 qcto
The '"QcMetadata"' class	class:QcMetadata length,QcMetadata-method mdata,QcMetadata-method mdata<-,QcMetadata,list-method metadata,QcMetadata-method metadata<-,QcMetadata,list-method names,QcMetadata-method names<-,QcMetadata,character-method print,QcMetadata-method QcMetadata QcMetadata-class show,QcMetadata-method [,QcMetadata-method [[,QcMetadata-method
The '"QcMetric"' class for QC items	class:QcMetric description,QcMetric-method description<-,QcMetric,character-method name,QcMetric-method name<-,QcMetric,character-method plot,QcMetric,missing-method plot<- plot<-,QcMetric,function-method qcdata qcdata,QcMetric,character-method qcdata,QcMetric,missing-method qcdata<- qcdata<-,QcMetric,ANY-method qcenv qcenv,QcMetric-method qcenv<- qcenv<-,QcMetric,environment-method QcMetric QcMetric-class qcshow show,QcMetric-method show<- show<-,QcMetric,function-method status status,QcMetric-method status<- status<-,QcMetric,logical-method
The '"QcMetrics"' class for collections of QC items	as.data.frame.QcMetrics class:QcMetrics length,QcMetrics-method mdata mdata,QcMetrics-method mdata<- mdata<-,QcMetrics,list-method mdata<-,QcMetrics,QcMetadata-method metadata metadata,QcMetrics-method metadata<- metadata<-,QcMetrics,list-method metadata<-,QcMetrics,QcMetadata-method name name,QcMetrics-method name<- name<-,QcMetrics,character-method qcdata,QcMetrics,ANY-method qcdata<-,QcMetrics,list-method QcMetrics QcMetrics-class show,QcMetrics-method status,QcMetrics-method status<-,QcMetrics,logical-method [,QcMetrics-method [[,QcMetrics-method
Automatic report generation	example_reports qcReport qcReport,QcMetrics-method qcReport-methods reporting reporting_html reporting_pdf reporting_rmd reporting_tex