{ "_id": "6ae74e862e87f76f20accdf5", "Package": "qcmetrics", "Type": "Package", "Title": "A Framework for Quality Control", "Version": "1.51.0", "Authors@R": "person(given = \"Laurent\", family = \"Gatto\",\nemail = \"laurent.gatto@uclouvain.be\",\nrole = c(\"aut\",\"cre\"))", "Description": "The package provides a framework for generic quality\ncontrol of data. It permits to create, manage and visualise\nindividual or sets of quality control metrics and generate\nquality control reports in various formats.", "License": "GPL-2", "URL": "http://lgatto.github.io/qcmetrics/articles/qcmetrics.html", "BugReports": "https://github.com/lgatto/qcmetrics/issues", "biocViews": "ImmunoOncology, Software, QualityControl, Proteomics,\nMicroarray, MassSpectrometry, Visualization, ReportWriting", "VignetteBuilder": "knitr", "RoxygenNote": "6.1.0", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:38:20 UTC", "RemoteUrl": "https://github.com/bioc/qcmetrics", "RemoteRef": "HEAD", "RemoteSha": "667351f56221215b13d51245232fecab018cbcd1", "NeedsCompilation": "no", "Packaged": { "Date": "2026-11-01 13:14:59 UTC", "User": "root" }, "Author": "Laurent Gatto [aut, cre]", "Maintainer": "Laurent Gatto ", "_user": "bioc", "_type": "src", "_file": "qcmetrics_1.51.0.tar.gz", "_fileid": "https://r2.ropensci.org/007b471078c25cf3e1afee1ca4d2440ed799b5269b7dc1944ee7f5f2b6eeaaf7", "_filesize": 4252702, "_sha256": "007b471078c25cf3e1afee1ca4d2440ed799b5269b7dc1944ee7f5f2b6eeaaf7", "_expires": "2027-02-09T14:36:52.000Z", "_created": "2026-11-01T13:14:59.000Z", "_published": "2026-11-01T14:36:54.561Z", "_upstream": "https://github.com/bioc/qcmetrics", "_status": "success", "_maintainer": { "name": "Laurent Gatto", "email": "laurent.gatto@uclouvain.be", "login": "lgatto", "mastodon": "@lgatto@fediscience.org", "description": "Open science, reproducible research, bioinformatics, computational biology, proteomics, more omics, emacs, a lot of R, running and parenting.\n", "uuid": 384198 }, "_jobs": [ { "job": 124859332652, "time": 152, "config": "bioc-checks", "r": "4.6.2", "check": "ERROR", "artifact": "13085876255" }, { "job": 124859332832, "time": 278, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "13086355379" }, { "job": 124859332764, "time": 220, "config": "linux-release-x86_64", "r": "4.6.2", "check": "NOTE", "artifact": "13086036137" }, { "job": 124859332679, "time": 134, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "13087730525" }, { "job": 124859332657, "time": 116, "config": "macos-release-arm64", "r": "4.6.2", "check": "NOTE", "artifact": "13087660605" }, { "job": 124856874415, "time": 284, "config": "source", "r": "4.6.2", "check": "OK", "artifact": "13084788350" }, { "job": 124859332662, "time": 139, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "13085289474" }, { "job": 124859332695, "time": 141, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "13084359257" }, { "job": 124859332787, "time": 141, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "NOTE", "artifact": "13085292164" }, { "job": 124859332786, "time": 123, "config": "windows-release-x86_64", "r": "4.6.2", "check": "NOTE", "artifact": "13084868606" } ], "_bioccheck": { "error": 1, "warning": 3, "note": 14 }, "_buildurl": "https://github.com/r-universe/bioc/actions/runs/41308867359", "_commit": { "id": "667351f56221215b13d51245232fecab018cbcd1", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777379900 }, "_distro": "resolute", "_host": "GitHub-Actions", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.3", "role": "Depends" }, { "package": "Biobase", "role": "Imports" }, { "package": "methods", "role": "Imports" }, { "package": "knitr", "role": "Imports" }, { "package": "tools", "role": "Imports" }, { "package": "xtable", "role": "Imports" }, { "package": "pander", "role": "Imports" }, { "package": "S4Vectors", "role": "Imports" }, { "package": "affy", "role": "Suggests" }, { "package": "MSnbase", "role": "Suggests" }, { "package": "ggplot2", "role": "Suggests" }, { "package": "lattice", "role": "Suggests" }, { "package": "mzR", "role": "Suggests" }, { "package": "BiocStyle", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "markdown", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 2, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.51.0", "bioc": "3.24", "repository": "bioc" }, { "branch": "release", "version": "1.50.0", "bioc": "3.23", "repository": "bioc" } ], "_topics": [ "immunooncology", "software", "qualitycontrol", "proteomics", "microarray", "massspectrometry", "visualization", "reportwriting" ], "_stars": 2, "_contributors": [ { "user": "lgatto", "count": 119, "uuid": 384198 }, { "user": "laurentgatto", "count": 52, "uuid": 32748897 }, { "user": "dtenenba", "count": 14, "uuid": 2286826 }, { "user": "nturaga", "count": 10, "uuid": 2746443 }, { "user": "hpages", "count": 2, "uuid": 8810451 }, { "user": "aoles", "count": 2, "uuid": 6545356 }, { "user": "vobencha", "count": 2, "uuid": 2466173 }, { "user": "kayla-morrell", "count": 1, "uuid": 32339524 }, { "user": "link-ny", "count": 1, "uuid": 4392950 }, { "user": "sonali-bioc", "count": 1, "uuid": 6373953 } ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 482, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 750, "source": "https://www.bioconductor.org/packages/stats/bioc/qcmetrics" }, "_mentions": 1, "_devurl": "https://github.com/lgatto/qcmetrics", "_searchresults": 5, "_abi": { "exports": [ { "key": "qcmetrics::QcMetadata", "hash": "bc67b8c1f1e3e41c" }, { "key": "qcmetrics::QcMetric", "hash": "2c51b7ae8443c480" }, { "key": "qcmetrics::QcMetrics", "hash": "5d574c72ef50bc50" }, { "key": "qcmetrics::generic:mdata", "hash": "3f4dc58fc4d56be0" }, { "key": "qcmetrics::generic:mdata<-", "hash": "dad68aa9ad9d323f" }, { "key": "qcmetrics::generic:name", "hash": "aceea91115ad9b54" }, { "key": "qcmetrics::generic:name<-", "hash": "c24c01b01432da01" }, { "key": "qcmetrics::generic:plot<-", "hash": "e241e22e01c12e42" }, { "key": "qcmetrics::generic:qcReport", "hash": "db18a082bab32880" }, { "key": "qcmetrics::generic:qcdata", "hash": "865411993942b425" }, { "key": "qcmetrics::generic:qcdata<-", "hash": "692c4cc412228dba" }, { "key": "qcmetrics::generic:qcenv", "hash": "c30371a2c33bf9d2" }, { "key": "qcmetrics::generic:qcenv<-", "hash": "d58a6a6b398ddd1d" }, { "key": "qcmetrics::generic:show<-", "hash": "d0c76b2e7fba29fc" }, { "key": "qcmetrics::generic:status", "hash": "f1a3de01655d1085" }, { "key": "qcmetrics::generic:status<-", "hash": "6628c98ac7a1ca29" } ], "imports": [ { "key": "Biobase::generic:description", "hash": "d4f299b87a8511d0" }, { "key": "Biobase::generic:description<-", "hash": "114eec98044e4063" }, { "key": "S4Vectors::generic:metadata", "hash": "08b92b4e67da1af1" }, { "key": "S4Vectors::generic:metadata<-", "hash": "4da6c365b700078c" } ] }, "_rbuild": "4.6.2", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/qcmetrics.html", "extra/readme.html", "extra/readme.md" ], "_homeurl": "https://github.com/lgatto/qcmetrics", "_realowner": "bioc", "_cranurl": false, "_exports": [ "as.data.frame.QcMetrics", "description", "description<-", "example_reports", "mdata", "mdata<-", "metadata", "metadata<-", "n15qc", "name", "name<-", "plot", "plot<-", "print", "Qc2Rmd", "Qc2Tex", "Qc2Tex2", "Qc2Tex3", "qcdata", "qcdata<-", "qcenv", "qcenv<-", "QcMetadata", "QcMetric", "QcMetrics", "qcReport", "qcshow", "show", "show<-", "status", "status<-" ], "_datasets": [ { "name": "psm", "title": "15N example data", "object": "n15psm", "file": "n15psm.rda", "class": [ "MSnSet" ], "fields": [], "table": false, "tojson": false } ], "_help": [ { "page": "n15qc", "title": "N15 labelling QC report", "topics": [ "n15qc" ] }, { "page": "psm", "title": "15N example data", "topics": [ "n15psm", "psm" ] }, { "page": "Qc2Tex", "title": "'QcMetric' sectioning functions", "topics": [ "Qc2Rmd", "Qc2Tex", "Qc2Tex2", "Qc2Tex3", "qcto" ] }, { "page": "QcMetadata-class", "title": "The '\"QcMetadata\"' class", "topics": [ "class:QcMetadata", "length,QcMetadata-method", "mdata,QcMetadata-method", "mdata<-,QcMetadata,list-method", "metadata,QcMetadata-method", "metadata<-,QcMetadata,list-method", "names,QcMetadata-method", "names<-,QcMetadata,character-method", "print,QcMetadata-method", "QcMetadata", "QcMetadata-class", "show,QcMetadata-method", "[,QcMetadata-method", "[[,QcMetadata-method" ] }, { "page": "QcMetric-class", "title": "The '\"QcMetric\"' class for QC items", "topics": [ "class:QcMetric", "description,QcMetric-method", "description<-,QcMetric,character-method", "name,QcMetric-method", "name<-,QcMetric,character-method", "plot,QcMetric,missing-method", "plot<-", "plot<-,QcMetric,function-method", "qcdata", "qcdata,QcMetric,character-method", "qcdata,QcMetric,missing-method", "qcdata<-", "qcdata<-,QcMetric,ANY-method", "qcenv", "qcenv,QcMetric-method", "qcenv<-", "qcenv<-,QcMetric,environment-method", "QcMetric", "QcMetric-class", "qcshow", "show,QcMetric-method", "show<-", "show<-,QcMetric,function-method", "status", "status,QcMetric-method", "status<-", "status<-,QcMetric,logical-method" ] }, { "page": "QcMetrics-class", "title": "The '\"QcMetrics\"' class for collections of QC items", "topics": [ "as.data.frame.QcMetrics", "class:QcMetrics", "length,QcMetrics-method", "mdata", "mdata,QcMetrics-method", "mdata<-", "mdata<-,QcMetrics,list-method", "mdata<-,QcMetrics,QcMetadata-method", "metadata", "metadata,QcMetrics-method", "metadata<-", "metadata<-,QcMetrics,list-method", "metadata<-,QcMetrics,QcMetadata-method", "name", "name,QcMetrics-method", "name<-", "name<-,QcMetrics,character-method", "qcdata,QcMetrics,ANY-method", "qcdata<-,QcMetrics,list-method", "QcMetrics", "QcMetrics-class", "show,QcMetrics-method", "status,QcMetrics-method", "status<-,QcMetrics,logical-method", "[,QcMetrics-method", "[[,QcMetrics-method" ] }, { "page": "qcReport-methods", "title": "Automatic report generation", "topics": [ "example_reports", "qcReport", "qcReport,QcMetrics-method", "qcReport-methods", "reporting", "reporting_html", "reporting_pdf", "reporting_rmd", "reporting_tex" ] } ], "_readme": "https://github.com/bioc/qcmetrics/raw/HEAD/README.md", "_rundeps": [ "Biobase", "BiocGenerics", "digest", "evaluate", "generics", "highr", "knitr", "pander", "Rcpp", "S4Vectors", "xfun", "xtable", "yaml" ], "_vignettes": [ { "source": "qcmetrics.Rmd", "filename": "qcmetrics.html", "title": "Index file for the qcmetrics package vignette", "author": "Laurent Gatto", "engine": "knitr::rmarkdown", "headings": [ "Introduction", "The QC classes", "The QcMetric class", "The QcMetrics class", "Creating QC pipelines", "Microarray degradation", "Proteomics raw data", "Processed N15 labelling data", "Report generation", "Custom reports", "QcMetric sections", "New report types", "QC packages", "Conclusions", "Session information", "References" ], "created": "2020-11-26 12:57:43", "modified": "2024-02-03 04:52:52", "commits": 3 } ], "_score": 6.03342375548695, "_indexed": true, "_nocasepkg": "qcmetrics", "_universes": [ "bioc", "lgatto" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.51.0", "date": "2026-11-01T13:36:07.000Z", "distro": "resolute", "commit": "667351f56221215b13d51245232fecab018cbcd1", "fileid": "https://r2.ropensci.org/74c75c1fd6a038ab1c5293ada28b8ac568a31d882ba77dbb16927bbe8b303e09", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41308867359" }, { "r": "4.6.2", "os": "linux", "version": "1.51.0", "date": "2026-11-01T13:35:24.000Z", "distro": "resolute", "commit": "667351f56221215b13d51245232fecab018cbcd1", "fileid": "https://r2.ropensci.org/4a6e891ffb1a6a8c6d3ffb695a0bbf832da14da7794043cd27b61f8509193616", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41308867359" }, { "r": "4.5.3", "os": "mac", "version": "1.51.0", "date": "2026-11-01T14:22:32.000Z", "commit": "667351f56221215b13d51245232fecab018cbcd1", "fileid": "https://r2.ropensci.org/0cc03ef7f4efebb547f6634499aab64940a347bab787998e3bf5509618f9ebe4", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41308867359" }, { "r": "4.6.2", "os": "mac", "version": "1.51.0", "date": "2026-11-01T14:22:04.000Z", "commit": "667351f56221215b13d51245232fecab018cbcd1", "fileid": "https://r2.ropensci.org/0acd5248262c708c4bdc2b98ce2eccb41953e64ed6017f758dbbd1c79519e6bd", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41308867359" }, { "r": "4.6.0", "os": "wasm", "version": "1.51.0", "date": "2026-11-01T13:34:40.000Z", "commit": "667351f56221215b13d51245232fecab018cbcd1", "fileid": "https://r2.ropensci.org/ca9c70b7538b1c6cc942fadffdc715b203b3439a9cd52b4460552d58c5d4f3e7", "status": "success", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41308867359" }, { "r": "4.7.0", "os": "win", "version": "1.51.0", "date": "2026-11-01T13:17:37.000Z", "commit": "667351f56221215b13d51245232fecab018cbcd1", "fileid": "https://r2.ropensci.org/a2d2e8ad5d589f42c1b2bcdf0f303d9abf2b93bf840637de61281d322c669527", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41308867359" }, { "r": "4.5.3", "os": "win", "version": "1.51.0", "date": "2026-11-01T13:17:38.000Z", "commit": "667351f56221215b13d51245232fecab018cbcd1", "fileid": "https://r2.ropensci.org/b989504359ba37a77ff8d19e8328fd8ad14131fc4418386bdcf163a3bd2c820b", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41308867359" }, { "r": "4.6.2", "os": "win", "version": "1.51.0", "date": "2026-11-01T13:17:20.000Z", "commit": "667351f56221215b13d51245232fecab018cbcd1", "fileid": "https://r2.ropensci.org/ede3249c812efa7b4423734247a350d800308b04a00b7a6fd77d7721db7ff429", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41308867359" } ] }