Package: qPLEXdata 1.31.2

Kamal Kishore Developer

qPLEXdata: Data accompanying qPLEXanalyzer package

qPLEX-RIME and Full proteome TMT mass spectrometry datasets.

Authors:Kamal Kishore Developer [aut, cre]

qPLEXdata_1.31.2.tar.gz
qPLEXdata_1.31.2.tar.gz(r-4.7-any)qPLEXdata_1.31.2.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
qPLEXdata/json (API)

# Install 'qPLEXdata' in R:

install.packages('qPLEXdata', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Datasets:

exp1_specificity - Exp1_specificity dataset
exp2_Xlink - Exp2_Xlink dataset
exp3_OHT_ESR1 - Exp3_OHT_ESR1 dataset
exp4_OHT_FP - Exp4_OHT_FP dataset
exp5_PDX - Exp5_PDX dataset
exp6_ER - Exp6_ER dataset
exp7_NCOA3 - Exp7_NCOA3 dataset
exp8_CBP - Exp8_CBP dataset
exp9_PolII - Exp9_PolII dataset

On BioConductor:qPLEXdata-1.31.2(data/experiment 3.24)qPLEXdata-1.30.1(data/experiment 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

experimentdata massspectrometrydata proteome datapkg

3.48 score 4 scripts 1 exports 140 dependencies

Last updated from:0559cf0a32. Checks:3 WARNING, 1 OK. Indexed: yes.

This is a data package. Data packages may be large and do not get checked across all platforms.

Target	Result	Time	Files	Syslog
bioc-checks	WARNING	229
linux-devel	WARNING	408
source / vignettes	OK	291
linux-release	WARNING	425

Exports:qPLEXdata

Dependencies:abind affy affyio AnnotationFilter askpass assertthat base64enc BH Biobase BiocBaseUtils BiocGenerics biocmake BiocManager BiocParallel Biostrings bit bit64 bslib cachem cli clipr clue cluster codetools cpp11 crayon crosstalk curl data.table DelayedArray digest dir.expiry doParallel dplyr evaluate farver fastmap filelock fontawesome foreach formatR fs futile.logger futile.options generics GenomicRanges ggdendro ggplot2 glue gtable highr hms htmltools htmlwidgets httr igraph impute IRanges isoband iterators jquerylib jsonlite knitr labeling lambda.r later lattice lazyeval lifecycle limma magrittr MALDIquant MASS Matrix MatrixGenerics matrixStats memoise MetaboCoreUtils mime MsCoreUtils MSnbase MultiAssayExperiment mzID mzR ncdf4 openssl otel pcaMethods pillar pkgconfig plotly plyr preprocessCore prettyunits progress promises ProtGenerics PSMatch PTMods purrr QFeatures qPLEXanalyzer R6 rappdirs RColorBrewer Rcpp readr reshape2 Rhdf5lib rlang rmarkdown S4Arrays S4Vectors S7 sass scales Seqinfo snow SparseArray Spectra statmod stringi stringr SummarizedExperiment sys tibble tidyr tidyselect tinytex tzdb utf8 vctrs viridisLite vroom vsn withr xfun XML XVector yaml

qPLEXdata: Analysis of qPLEX-RIME data and Total proteome data

Description | Usage | Experiment 1: ER interactome in MCF7 cells | Experiment 2: Crosslinking comparison | Experiment 3: ER complex upon OHT treatment | Experiment 4: Total proteome upon OHT treatment | Experiment 5: ER interactome in PDX tumours | Experiment 6: ER interactome in human breast cancer tumours | Experiment 7: NCOA3 interactome in MCF7 cells | Experiment 8: CBP interactome in MCF7 cells | Experiment 9: POLR2A (RNA polymerase II) interactome in MCF7 cells | Session Information

Rendered fromqPLEXdata.Rmdusingknitr::rmarkdown

Last update: 2026-06-12
Started: 2026-06-12

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
exp1_specificity dataset	exp1_specificity
exp2_Xlink dataset	exp2_Xlink
exp3_OHT_ESR1 dataset	exp3_OHT_ESR1
exp4_OHT_FP dataset	exp4_OHT_FP
exp5_PDX dataset	exp5_PDX
exp6_ER dataset	exp6_ER
exp7_NCOA3 dataset	exp7_NCOA3
exp8_CBP dataset	exp8_CBP
exp9_PolII dataset	exp9_PolII
Available datasets in the qPLEXdata package	qPLEXdata

Usage by other packages (reverse dependencies)