NEWS

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qPLEXdata 1.31.2

• Converted the vignette from Sweave/PDF (qPLEXdata.Rnw) to R Markdown/HTML (qPLEXdata.Rmd) using BiocStyle, removing the LaTeX build dependency.

qPLEXdata 1.31.1

• Fixed vignette build error: pass the contrast name (names(contrasts)) rather than the named contrast vector to getContrastResults(), matching the current qPLEXanalyzer API.

qPLEXdata 1.1.1

• Fixed broken code in Vignette

qPLEXdata 0.99.0

• Initial commit with data from the qPLEX-RIME and Full proteome TMT.