Package: procoil 2.35.0
procoil: Prediction of Oligomerization of Coiled Coil Proteins
The package allows for predicting whether a coiled coil sequence (amino acid sequence plus heptad register) is more likely to form a dimer or more likely to form a trimer. Additionally to the prediction itself, a prediction profile is computed which allows for determining the strengths to which the individual residues are indicative for either class. Prediction profiles can also be visualized as curves or heatmaps.
Authors:
procoil_2.35.0.tar.gz
procoil_2.35.0.zip(r-4.5)procoil_2.35.0.zip(r-4.4)procoil_2.35.0.zip(r-4.3)
procoil_2.35.0.tgz(r-4.4-any)procoil_2.35.0.tgz(r-4.3-any)
procoil_2.35.0.tar.gz(r-4.5-noble)procoil_2.35.0.tar.gz(r-4.4-noble)
procoil_2.35.0.tgz(r-4.4-emscripten)procoil_2.35.0.tgz(r-4.3-emscripten)
procoil.pdf |procoil.html✨
procoil/json (API)
NEWS
# Install 'procoil' in R: |
install.packages('procoil', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/ubod/procoil/issues
- PrOCoilModel - Class "CCModel"
- PrOCoilModelBA - Class "CCModel"
On BioConductor:procoil-2.35.0(bioc 3.21)procoil-2.34.0(bioc 3.20)
proteomicsclassificationsupportvectormachine
Last updated 2 months agofrom:57dcf7bb0f. Checks:OK: 5 NOTE: 2. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Dec 01 2024 |
R-4.5-win | NOTE | Dec 01 2024 |
R-4.5-linux | NOTE | Dec 01 2024 |
R-4.4-win | OK | Dec 01 2024 |
R-4.4-mac | OK | Dec 01 2024 |
R-4.3-win | OK | Dec 01 2024 |
R-4.3-mac | OK | Dec 01 2024 |
Exports:heatmapplotpredictreadCCModelshowwriteCCModel
Dependencies:apclusteraskpassBiocGenericsBiostringsclasscrayoncurle1071genericsGenomeInfoDbGenomeInfoDbDatahttrIRangesjsonlitekebabskernlablatticeLiblineaRMASSMatrixmimeopensslproxyR6RcppS4VectorssysUCSC.utilsXVectorzlibbioc
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Prediction of Oligomerization of Coiled Coil Proteins | procoil-package procoil |
Class "CCModel" | CCModel CCModel-class PrOCoilModel PrOCoilModelBA show,CCModel-method show.CCModel weights,CCModel-method weights.CCModel |
Reading and writing of coiled coil prediction model from/to files | CCModel-FileOps readCCModel writeCCModel |
Class "CCProfile" | baselines,CCProfile-method baselines.CCProfile CCProfile CCProfile-class fitted,CCProfile-method fitted.CCProfile heatmap,CCProfile,missing-method heatmap.CCProfile profile,CCProfile-method profile.CCProfile profiles,CCProfile-method profiles.CCProfile sequences,CCProfile-method sequences.CCProfile show,CCProfile-method show.CCProfile [,CCProfile,index,ANY,ANY-method |
Plotting prediction profiles | plot plot,CCProfile,missing-method plot-methods plot.CCProfile |
Predict oligomerization of one or more coiled coil segments | predict predict,CCModel-method predict-methods predict.CCModel |