NEWS

procoil 2.31.1

updated models PrOCoilModel and PrOCoilModelBA that have been trained with newer data and up-to-date methods
general re-design of classes and functions to allow for multiple predictions per run; that comes along with a more streamlined and more versatile interface how to supply sequences and registers to predict().
predictions and plots are now performed by the 'kebabs' package; this led to a major performance increase.
the integration of the 'kebabs' package also allowed for inheriting functions like heatmap() and accessors, such as, sequences(), baselines(), and profiles()
added a fitted() method to allow for easy extraction of predictions
addition of small example model file inst/examples/testModel.CCModel
streamlining/simplification of some man pages
several corrections and updates of man pages and package vignette
changed vignette building engine from Sweave to knitr
removal of reference to Git-SVN bridge

changed version number to 1.1.0 for consistency with previous versions published on the author's institute page
minor improvements of vignette (accessor functions)
fixed bug (error when calling predict() on a BString/AAString object without previously loading Biostrings)
fixed bug in predict() for short sequences