Package: pickgene 1.85.0
Brian S. Yandell
pickgene: Adaptive Gene Picking for Microarray Expression Data Analysis
Functions to Analyze Microarray (Gene Expression) Data.
Authors:
pickgene_1.85.0.tar.gz
pickgene_1.85.0.zip(r-4.7)pickgene_1.85.0.zip(r-4.6)pickgene_1.85.0.zip(r-4.5)
pickgene_1.85.0.tgz(r-4.6-any)pickgene_1.85.0.tgz(r-4.5-any)
pickgene_1.85.0.tar.gz(r-4.7-any)pickgene_1.85.0.tar.gz(r-4.6-any)
pickgene_1.85.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
pickgene/json (API)
| # Install 'pickgene' in R: |
| install.packages('pickgene', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:pickgene-1.85.0(bioc 3.24)pickgene-1.84.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
microarraydifferentialexpression
Last updated from:06dac9eb0d. Checks:1 ERROR, 7 WARNING, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 131 | ||
| linux-devel-x86_64 | WARNING | 128 | ||
| source / vignettes | OK | 135 | ||
| linux-release-x86_64 | WARNING | 168 | ||
| macos-release-arm64 | WARNING | 100 | ||
| macos-oldrel-arm64 | WARNING | 64 | ||
| windows-devel | WARNING | 70 | ||
| windows-release | WARNING | 64 | ||
| windows-oldrel | WARNING | 66 | ||
| wasm-release | OK | 96 |
Exports:adjustlevelchen.polychipnormdencontdencumdenlinesdo.oddsplotem.ggbfitgggammadenholmslod.ggblod.plotlodprobesloglikmakecontmodel.pickgenemultipickgenenlminbnlogliknormal.richmondnpdiagnploglikoddsplotorangenepickedchisqpickedhistpickedpairpickedscorepickgenepickgene.polypickgene.twopickgene2pmargpredrecurrangenerankgenerobustboxrobustscales.check0s.check1s.check2s.margshrinkplotsixdentoprankgenetwoarray.normtwoarray.plottwowayanovapickgene
Dependencies:MASS
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| EM calculation for Gamma-Gamma-Bernoulli Model | em.ggb |
| Create Model Matrix for Orthogonal Contrasts | model.pickgene |
| Odds Plot for Differential Microarray Expression | oddsplot |
| Plot and Pick Genes based on Differential Expression | pickgene |
| Robust Estimation of Median (center) and MAD (scale) | robustscale |
| Yi Lin's simulations for microarray analysis | Simulation.pickgene |