Package: pickgene 1.77.0
Brian S. Yandell
pickgene: Adaptive Gene Picking for Microarray Expression Data Analysis
Functions to Analyze Microarray (Gene Expression) Data.
Authors:
pickgene_1.77.0.tar.gz
pickgene_1.77.0.zip(r-4.5)pickgene_1.77.0.zip(r-4.4)pickgene_1.77.0.zip(r-4.3)
pickgene_1.77.0.tgz(r-4.4-any)pickgene_1.77.0.tgz(r-4.3-any)
pickgene_1.77.0.tar.gz(r-4.5-noble)pickgene_1.77.0.tar.gz(r-4.4-noble)
pickgene_1.77.0.tgz(r-4.4-emscripten)pickgene_1.77.0.tgz(r-4.3-emscripten)
pickgene.pdf |pickgene.html✨
pickgene/json (API)
| # Install 'pickgene' in R: |
| install.packages('pickgene', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:pickgene-1.77.0(bioc 3.20)pickgene-1.76.0(bioc 3.19)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 months agofrom:4ee579bf6c
Exports:adjustlevelchen.polychipnormdencontdencumdenlinesdo.oddsplotem.ggbfitgggammadenholmslod.ggblod.plotlodprobesloglikmakecontmodel.pickgenemultipickgenenlminbnlogliknormal.richmondnpdiagnploglikoddsplotorangenepickedchisqpickedhistpickedpairpickedscorepickgenepickgene.polypickgene.twopickgene2pmargpredrecurrangenerankgenerobustboxrobustscales.check0s.check1s.check2s.margshrinkplotsixdentoprankgenetwoarray.normtwoarray.plottwowayanovapickgene
Dependencies:MASS
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| EM calculation for Gamma-Gamma-Bernoulli Model | em.ggb |
| Create Model Matrix for Orthogonal Contrasts | model.pickgene |
| Odds Plot for Differential Microarray Expression | oddsplot |
| Plot and Pick Genes based on Differential Expression | pickgene |
| Robust Estimation of Median (center) and MAD (scale) | robustscale |
| Yi Lin's simulations for microarray analysis | Simulation.pickgene |