{ "_id": "6a1ab0681d7bb097a09d5847", "Package": "pickgene", "Version": "1.85.0", "Author": "Brian S. Yandell ", "Title": "Adaptive Gene Picking for Microarray Expression Data Analysis", "Description": "Functions to Analyze Microarray (Gene Expression) Data.", "Maintainer": "Brian S. Yandell ", "License": "GPL (>= 2)", "URL": "http://www.stat.wisc.edu/~yandell/statgen", "biocViews": "Microarray, DifferentialExpression", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:30:23 UTC", "RemoteUrl": "https://github.com/bioc/pickgene", "RemoteRef": "HEAD", "RemoteSha": "06dac9eb0de2da98dcd2aba94212461dad4196aa", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-30 07:06:55 UTC", "User": "root" }, "MD5sum": "3167e08178060e55a54ee2010f7b8b3a", "_user": "bioc", "_type": "src", "_file": "pickgene_1.85.0.tar.gz", "_fileid": "c452721d9fde133e6d5eb5104106e1dfe918e3f73f65da14795586fcdd66986f", "_filesize": 311359, "_sha256": "c452721d9fde133e6d5eb5104106e1dfe918e3f73f65da14795586fcdd66986f", "_created": "2026-05-30T07:06:55.000Z", "_published": "2026-05-30T09:39:52.528Z", "_jobs": [ { "job": 78632365670, "time": 124, "config": "bioc-checks", "r": "4.6.0", "check": "ERROR", "artifact": "7306336001" }, { "job": 78632365667, "time": 123, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "WARNING", "artifact": "7306336097" }, { "job": 78632365669, "time": 115, "config": "linux-release-x86_64", "r": "4.6.0", "check": "WARNING", "artifact": "7306335163" }, { "job": 78632365661, "time": 95, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "WARNING", "artifact": "7307197483" }, { "job": 78632365673, "time": 84, "config": "macos-release-arm64", "r": "4.6.0", "check": "WARNING", "artifact": "7307197049" }, { "job": 78632214214, "time": 161, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7306321710" }, { "job": 78632365675, "time": 87, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7306332011" }, { "job": 78632365665, "time": 74, "config": "windows-devel", "r": "4.7.0", "check": "WARNING", "artifact": "7306330874" }, { "job": 78632365677, "time": 61, "config": "windows-oldrel", "r": "4.5.3", "check": "WARNING", "artifact": "7306329195" }, { "job": 78632365672, "time": 65, "config": "windows-release", "r": "4.6.0", "check": "WARNING", "artifact": "7306329468" } ], "_bioccheck": { "error": 2, "warning": 4, "note": 15 }, "_buildurl": "https://github.com/r-universe/bioc/actions/runs/26677594450", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/bioc/pickgene", "_commit": { "id": "06dac9eb0de2da98dcd2aba94212461dad4196aa", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777379423 }, "_maintainer": { "name": "Brian S. Yandell", "email": "yandell@stat.wisc.edu" }, "_distro": "noble", "_registered": true, "_dependencies": [ { "package": "graphics", "role": "Imports" }, { "package": "grDevices", "role": "Imports" }, { "package": "MASS", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "utils", "role": "Imports" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.85.0", "bioc": "3.24" }, { "branch": "release", "version": "1.84.0", "bioc": "3.23" } ], "_topics": [ "microarray", "differentialexpression" ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 370, "source": "https://www.bioconductor.org/packages/stats/bioc/pickgene" }, "_searchresults": 5, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/pickgene.html", "manual.pdf" ], "_realowner": "bioc", "_cranurl": false, "_exports": [ "adjustlevel", "chen.poly", "chipnorm", "dencont", "dencum", "denlines", "do.oddsplot", "em.ggb", "fitgg", "gammaden", "holms", "lod.ggb", "lod.plot", "lodprobes", "loglik", "makecont", "model.pickgene", "multipickgene", "nlminb", "nloglik", "normal.richmond", "npdiag", "nploglik", "oddsplot", "orangene", "pickedchisq", "pickedhist", "pickedpair", "pickedscore", "pickgene", "pickgene.poly", "pickgene.two", "pickgene2", "pmarg", "predrecur", "rangene", "rankgene", "robustbox", "robustscale", "s.check0", "s.check1", "s.check2", "s.marg", "shrinkplot", "sixden", "toprankgene", "twoarray.norm", "twoarray.plot", "twowayanovapickgene" ], "_help": [ { "page": "em.ggb", "title": "EM calculation for Gamma-Gamma-Bernoulli Model", "topics": [ "em.ggb" ] }, { "page": "model.pickgene", "title": "Create Model Matrix for Orthogonal Contrasts", "topics": [ "model.pickgene" ] }, { "page": "oddsplot", "title": "Odds Plot for Differential Microarray Expression", "topics": [ "oddsplot" ] }, { "page": "pickgene", "title": "Plot and Pick Genes based on Differential Expression", "topics": [ "pickgene" ] }, { "page": "robustscale", "title": "Robust Estimation of Median (center) and MAD (scale)", "topics": [ "robustscale" ] }, { "page": "Simulation.pickgene", "title": "Yi Lin's simulations for microarray analysis", "topics": [ "Simulation.pickgene" ] } ], "_rundeps": [ "MASS" ], "_vignettes": [ { "source": "pickgene.Rnw", "filename": "pickgene.pdf", "title": "Adaptive Gene Picking for Microarray Expression Data Analysis", "engine": "utils::Sweave", "headings": [], "created": "2013-11-01 19:50:26", "modified": "2013-11-01 19:50:26", "commits": 1 } ], "_score": 3.3010299956639813, "_indexed": true, "_nocasepkg": "pickgene", "_universes": [ "bioc" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.85.0", "date": "2026-05-30T07:08:58.000Z", "distro": "noble", "commit": "06dac9eb0de2da98dcd2aba94212461dad4196aa", "fileid": "beb8ce19a7170177e6884ec0e9b24865da1e8a96478fa64d5af880b230e86c6d", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26677594450" }, { "r": "4.6.0", "os": "linux", "version": "1.85.0", "date": "2026-05-30T07:08:51.000Z", "distro": "noble", "commit": "06dac9eb0de2da98dcd2aba94212461dad4196aa", "fileid": "489ac240ff1edbc46bc37b3eab2b70206739d88695fb0f6a6e0cc89a51c14ecb", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26677594450" }, { "r": "4.5.3", "os": "mac", "version": "1.85.0", "date": "2026-05-30T09:31:43.000Z", "commit": "06dac9eb0de2da98dcd2aba94212461dad4196aa", "fileid": "6289552fb08b336bbdf0620c9772e9ff638d02225b1dd36604b17e7c2f1483a3", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26677594450" }, { "r": "4.6.0", "os": "mac", "version": "1.85.0", "date": "2026-05-30T09:31:38.000Z", "commit": "06dac9eb0de2da98dcd2aba94212461dad4196aa", "fileid": "e89375f78b52c41c9a95082779ce5d855c14dbbd317c6508f2eaab2144beef2b", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26677594450" }, { "r": "4.6.0", "os": "wasm", "version": "1.85.0", "date": "2026-05-30T07:08:37.000Z", "commit": "06dac9eb0de2da98dcd2aba94212461dad4196aa", "fileid": "4e920d291b8742adad4d076db9ebff30ced10974676830fbbb4ce70fc975e6b6", "status": "success", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26677594450" }, { "r": "4.7.0", "os": "win", "version": "1.85.0", "date": "2026-05-30T07:08:06.000Z", "commit": "06dac9eb0de2da98dcd2aba94212461dad4196aa", "fileid": "d5ad124aee03ad4de737cfd2c8b4307774e79e2ddfc6dfdd7b310998e04e1d67", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26677594450" }, { "r": "4.5.3", "os": "win", "version": "1.85.0", "date": "2026-05-30T07:07:54.000Z", "commit": "06dac9eb0de2da98dcd2aba94212461dad4196aa", "fileid": "eec44e0d59d0a885ea089ffbdfa83b03f42bbab88d94855d5fc703bc99447c31", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26677594450" }, { "r": "4.6.0", "os": "win", "version": "1.85.0", "date": "2026-05-30T07:07:56.000Z", "commit": "06dac9eb0de2da98dcd2aba94212461dad4196aa", "fileid": "5e7f25b43d1137eaf401e1344e6653ad59ff9a8722d0be4af261ccda8f1a352d", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26677594450" } ] }