{
  "_id": "6ab386553d719c1f84090a97",
  "Package": "pickgene",
  "Version": "1.85.0",
  "Author": "Brian S. Yandell <yandell@stat.wisc.edu>",
  "Title": "Adaptive Gene Picking for Microarray Expression Data Analysis",
  "Description": "Functions to Analyze Microarray (Gene Expression) Data.",
  "Maintainer": "Brian S. Yandell <yandell@stat.wisc.edu>",
  "License": "GPL (>= 2)",
  "URL": "http://www.stat.wisc.edu/~yandell/statgen",
  "biocViews": "Microarray, DifferentialExpression",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:30:23 UTC",
  "RemoteUrl": "https://github.com/bioc/pickgene",
  "RemoteRef": "HEAD",
  "RemoteSha": "06dac9eb0de2da98dcd2aba94212461dad4196aa",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-09-23 07:49:05 UTC",
    "User": "root"
  },
  "_user": "bioc",
  "_type": "src",
  "_file": "pickgene_1.85.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/46c2fb04e526a2673ae5856dfbcae9cfc9c2f1c2a6b27d5502eddb08e3e4ede7",
  "_filesize": 313477,
  "_sha256": "46c2fb04e526a2673ae5856dfbcae9cfc9c2f1c2a6b27d5502eddb08e3e4ede7",
  "_expires": "2027-01-01T07:57:08.000Z",
  "_created": "2026-09-23T07:49:05.000Z",
  "_published": "2026-09-23T07:57:09.744Z",
  "_bioccheck": {
    "error": 2,
    "warning": 5,
    "note": 14
  },
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/35833413881",
  "_status": "success",
  "_upstream": "https://github.com/bioc/pickgene",
  "_commit": {
    "id": "06dac9eb0de2da98dcd2aba94212461dad4196aa",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n",
    "time": 1777379423
  },
  "_maintainer": {
    "name": "Brian S. Yandell",
    "email": "yandell@stat.wisc.edu"
  },
  "_distro": "resolute",
  "_jobs": [
    {
      "job": 107092162403,
      "time": 140,
      "config": "bioc-checks",
      "r": "4.6.1",
      "check": "ERROR",
      "artifact": "10738426932"
    },
    {
      "job": 107092162452,
      "time": 133,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "10738645609"
    },
    {
      "job": 107092162509,
      "time": 190,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "10737534890"
    },
    {
      "job": 107092162456,
      "time": 114,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "10738332964"
    },
    {
      "job": 107092162563,
      "time": 82,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "10738272866"
    },
    {
      "job": 107091193641,
      "time": 196,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "10737584358"
    },
    {
      "job": 107092162423,
      "time": 99,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "10738114280"
    },
    {
      "job": 107092162562,
      "time": 68,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "10738650338"
    },
    {
      "job": 107092162439,
      "time": 60,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "10738154107"
    },
    {
      "job": 107092162474,
      "time": 63,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "10737939930"
    }
  ],
  "_registered": true,
  "_dependencies": [
    {
      "package": "graphics",
      "role": "Imports"
    },
    {
      "package": "grDevices",
      "role": "Imports"
    },
    {
      "package": "MASS",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    }
  ],
  "_owner": "bioc",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 2
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.85.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.84.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "microarray",
    "differentialexpression"
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "followers": 468,
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
    "count": 508,
    "source": "https://www.bioconductor.org/packages/stats/bioc/pickgene"
  },
  "_searchresults": 6,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/pickgene.html"
  ],
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "adjustlevel",
    "chen.poly",
    "chipnorm",
    "dencont",
    "dencum",
    "denlines",
    "do.oddsplot",
    "em.ggb",
    "fitgg",
    "gammaden",
    "holms",
    "lod.ggb",
    "lod.plot",
    "lodprobes",
    "loglik",
    "makecont",
    "model.pickgene",
    "multipickgene",
    "nlminb",
    "nloglik",
    "normal.richmond",
    "npdiag",
    "nploglik",
    "oddsplot",
    "orangene",
    "pickedchisq",
    "pickedhist",
    "pickedpair",
    "pickedscore",
    "pickgene",
    "pickgene.poly",
    "pickgene.two",
    "pickgene2",
    "pmarg",
    "predrecur",
    "rangene",
    "rankgene",
    "robustbox",
    "robustscale",
    "s.check0",
    "s.check1",
    "s.check2",
    "s.marg",
    "shrinkplot",
    "sixden",
    "toprankgene",
    "twoarray.norm",
    "twoarray.plot",
    "twowayanovapickgene"
  ],
  "_help": [
    {
      "page": "em.ggb",
      "title": "EM calculation for Gamma-Gamma-Bernoulli Model",
      "topics": [
        "em.ggb"
      ]
    },
    {
      "page": "model.pickgene",
      "title": "Create Model Matrix for Orthogonal Contrasts",
      "topics": [
        "model.pickgene"
      ]
    },
    {
      "page": "oddsplot",
      "title": "Odds Plot for Differential Microarray Expression",
      "topics": [
        "oddsplot"
      ]
    },
    {
      "page": "pickgene",
      "title": "Plot and Pick Genes based on Differential Expression",
      "topics": [
        "pickgene"
      ]
    },
    {
      "page": "robustscale",
      "title": "Robust Estimation of Median (center) and MAD (scale)",
      "topics": [
        "robustscale"
      ]
    },
    {
      "page": "Simulation.pickgene",
      "title": "Yi Lin's simulations for microarray analysis",
      "topics": [
        "Simulation.pickgene"
      ]
    }
  ],
  "_rundeps": [
    "MASS"
  ],
  "_vignettes": [
    {
      "source": "pickgene.Rnw",
      "filename": "pickgene.pdf",
      "title": "Adaptive Gene Picking for Microarray Expression Data Analysis",
      "engine": "utils::Sweave",
      "headings": [],
      "created": "2013-11-01 19:50:26",
      "modified": "2013-11-01 19:50:26",
      "commits": 1
    }
  ],
  "_score": 3.3010299956639813,
  "_indexed": true,
  "_nocasepkg": "pickgene",
  "_universes": [
    "bioc"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.85.0",
      "date": "2026-09-23T07:51:20.000Z",
      "distro": "resolute",
      "commit": "06dac9eb0de2da98dcd2aba94212461dad4196aa",
      "fileid": "https://r2.ropensci.org/b1dd72886757ee43f9ce77d43e1024d1edb7b3a17d421e15b38854940fa43e49",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/35833413881"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.85.0",
      "date": "2026-09-23T07:52:16.000Z",
      "distro": "resolute",
      "commit": "06dac9eb0de2da98dcd2aba94212461dad4196aa",
      "fileid": "https://r2.ropensci.org/98a6bbd4facd78934344d77161c19551e4fad745391064254551acab14809ace",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/35833413881"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.85.0",
      "date": "2026-09-23T07:56:19.000Z",
      "commit": "06dac9eb0de2da98dcd2aba94212461dad4196aa",
      "fileid": "https://r2.ropensci.org/c23452a83fa225efceaab4f5323e05383a5eaca4f06b79fc6ae4be4ea59b1208",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/35833413881"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.85.0",
      "date": "2026-09-23T07:55:47.000Z",
      "commit": "06dac9eb0de2da98dcd2aba94212461dad4196aa",
      "fileid": "https://r2.ropensci.org/fb889b5addc6229737271f93cb690ffe3df8cdd9c4befd9e23a656b42a17c738",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/35833413881"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.85.0",
      "date": "2026-09-23T07:50:59.000Z",
      "commit": "06dac9eb0de2da98dcd2aba94212461dad4196aa",
      "fileid": "https://r2.ropensci.org/b67013ac0ce7d77a7bff594d4b8f32df63d5b1a46adb40ce30466be82b360ec7",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/35833413881"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.85.0",
      "date": "2026-09-23T07:50:09.000Z",
      "commit": "06dac9eb0de2da98dcd2aba94212461dad4196aa",
      "fileid": "https://r2.ropensci.org/9cfa5c28ee0d90a3f376c8b4ac0c7e4596e88e3a54973610ee01c3b26280fb6b",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/35833413881"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.85.0",
      "date": "2026-09-23T07:50:02.000Z",
      "commit": "06dac9eb0de2da98dcd2aba94212461dad4196aa",
      "fileid": "https://r2.ropensci.org/e6778dc0a6d3c896988f272c652d88712fa9786bf1049ffb26dc5c08506a2aa1",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/35833413881"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.85.0",
      "date": "2026-09-23T07:50:05.000Z",
      "commit": "06dac9eb0de2da98dcd2aba94212461dad4196aa",
      "fileid": "https://r2.ropensci.org/665a1c2c70a696a12b43aa1ae9637141a9deb09fbe172ef2b4b235d286bb57e7",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/35833413881"
    }
  ]
}