Package: notameViz 1.3.0

Vilhelm Suksi

notameViz: Workflow for non-targeted LC-MS metabolic profiling

Provides visualization functionality for untargeted LC-MS metabolomics research. Includes quality control visualizations, feature-wise visualizations and results visualizations.

Authors:Anton Klåvus [aut, cph], Jussi Paananen [aut, cph], Oskari Timonen [aut, cph], Atte Lihtamo [aut], Vilhelm Suksi [aut, cre], Retu Haikonen [aut], Leo Lahti [aut], Kati Hanhineva [aut], Ville Koistinen [ctb], Olli Kärkkäinen [ctb], Artur Sannikov [ctb]

notameViz_1.3.0.tar.gz
notameViz_1.3.0.zip(r-4.7)notameViz_1.3.0.zip(r-4.6)notameViz_1.3.0.zip(r-4.5)
notameViz_1.3.0.tgz(r-4.6-any)notameViz_1.3.0.tgz(r-4.5-any)
notameViz_1.3.0.tar.gz(r-4.7-any)notameViz_1.3.0.tar.gz(r-4.6-any)
notameViz_1.3.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
notameViz/json (API)
NEWS

# Install 'notameViz' in R:
install.packages('notameViz', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/hanhineva-lab/notameviz/issues

On BioConductor:notameViz-1.3.0(bioc 3.24)notameViz-1.2.0(bioc 3.23)

biomedicalinformaticsmetabolomicsdataimportmassspectrometrybatcheffectmultiplecomparisonnormalizationqualitycontrolvisualizationpreprocessing

5.04 score 6 scripts 245 downloads 28 exports 73 dependencies

Last updated from:bd31848ff3. Checks:8 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksNOTE164
linux-devel-x86_64NOTE453
source / vignettesOK297
linux-release-x86_64NOTE417
macos-release-arm64NOTE186
macos-oldrel-arm64NOTE249
windows-develNOTE478
windows-releaseNOTE365
windows-oldrelNOTE377
wasm-releaseOK143

Exports:manhattan_plotmz_rt_plotplot_dendrogramplot_dist_densityplot_effect_heatmapplot_injection_lmplot_p_histogramplot_pcaplot_pca_arrowsplot_pca_hexbinplot_pca_loadingsplot_qualityplot_sample_boxplotsplot_sample_heatmapplot_tsneplot_tsne_arrowsplot_tsne_hexbinsave_batch_plotssave_beeswarm_plotssave_dc_plotssave_group_boxplotssave_group_lineplotssave_plotsave_QC_plotssave_scatter_plotssave_subject_line_plotsvisualize_clustersvolcano_plot

Dependencies:abindaskpassbeeswarmBHBiobaseBiocGenericsBiocParallelclicodetoolscowplotcpp11curlDelayedArraydevEMFdplyrfarverformatRfutile.loggerfutile.optionsgenericsGenomicRangesggbeeswarmggdendroggplot2ggrepelgluegtableIRangesisobandlabelinglambda.rlatticelifecyclelimmamagrittrMASSMatrixMatrixGenericsmatrixStatsnotameopenxlsxpcaMethodspillarpkgconfigpurrrqpdfR6RColorBrewerRcpprlangRtsneS4ArraysS4VectorsS7scalesSeqinfosnowSparseArraystatmodstringistringrSummarizedExperimentsystibbletidyrtidyselectutf8vctrsviporviridisLitewithrXVectorzip

Non-targeted metabolomics visualization

Anton Klåvus, Vilhelm Suksi

Rendered fromNon_targeted_metabolomics_visualization.Rmdusingknitr::rmarkdownon Jun 01 2026.

Last update: 2025-10-03
Started: 2025-09-03