Package: notameViz
Type: Package
Title: Workflow for non-targeted LC-MS metabolic profiling
Version: 1.3.0
Authors@R: c(
    person("Anton", "Klåvus", role = c("aut", "cph"),
           comment = c(ORCID = "0000-0003-2612-0230")),
    person("Jussi", "Paananen", role = c("aut", "cph"),
           comment = c(ORCID = "0000-0001-5100-4907")),
    person("Oskari", "Timonen", role = c("aut", "cph"),
           comment = c(ORCID = "0000-0002-6317-6260")),
    person("Atte", "Lihtamo", role = "aut"),
    person("Vilhelm", "Suksi", email = "vksuks@utu.fi", role = c("aut", "cre"), 
           comment = c(ORCID = "0009-0005-1108-518X")),
    person("Retu", "Haikonen", role = "aut",
           comment = c(ORCID = "0000-0003-0830-3850")),
    person("Leo", "Lahti", role = "aut",
           comment = c(ORCID = "0000-0001-5537-637X")),
    person("Kati", "Hanhineva", role = "aut",
           comment = c(ORCID = "0000-0001-6834-7375")),
    person("Ville", "Koistinen", role = "ctb",
           comment = c(ORCID = "0000-0003-1587-8361")),
    person("Olli", "Kärkkäinen", role = "ctb",
           comment = c(ORCID = "0000-0003-0825-4956")),
    person("Artur", "Sannikov", role = "ctb"))
Description: Provides visualization functionality for untargeted LC-MS
        metabolomics research. Includes quality control visualizations,
        feature-wise visualizations and results visualizations.
License: MIT + file LICENSE
Encoding: UTF-8
biocViews: BiomedicalInformatics, Metabolomics, DataImport,
        MassSpectrometry, BatchEffect, MultipleComparison,
        Normalization, QualityControl, Visualization, Preprocessing
Depends: R (>= 4.5.0), ggplot2, SummarizedExperiment
Imports: BiocGenerics, cowplot, devEMF, dplyr, ggbeeswarm, ggdendro,
        ggrepel, grDevices, limma, methods, notame, pcaMethods, qpdf,
        Rtsne, scales, stringr, stats, tibble, tidyr, utils
Suggests: batchCorr, BiocStyle, igraph, knitr, notameStats, testthat
URL: https://github.com/hanhineva-lab/notameViz
BugReports: https://github.com/hanhineva-lab/notameViz/issues
RoxygenNote: 7.3.3
VignetteBuilder: knitr
Config/testthat/parallel: true
Config/pak/sysreqs: libfontconfig1-dev libicu-dev libjpeg-dev
        libssl-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 13:05:40 UTC
RemoteUrl: https://github.com/bioc/notameViz
RemoteRef: HEAD
RemoteSha: bd31848ff31c03900c21140e8b6fac780a2dbe54
NeedsCompilation: no
Packaged: 2026-06-05 10:46:33 UTC; root
Author: Anton Klåvus [aut, cph] (ORCID:
    <https://orcid.org/0000-0003-2612-0230>),
  Jussi Paananen [aut, cph] (ORCID:
    <https://orcid.org/0000-0001-5100-4907>),
  Oskari Timonen [aut, cph] (ORCID:
    <https://orcid.org/0000-0002-6317-6260>),
  Atte Lihtamo [aut],
  Vilhelm Suksi [aut, cre] (ORCID:
    <https://orcid.org/0009-0005-1108-518X>),
  Retu Haikonen [aut] (ORCID: <https://orcid.org/0000-0003-0830-3850>),
  Leo Lahti [aut] (ORCID: <https://orcid.org/0000-0001-5537-637X>),
  Kati Hanhineva [aut] (ORCID: <https://orcid.org/0000-0001-6834-7375>),
  Ville Koistinen [ctb] (ORCID: <https://orcid.org/0000-0003-1587-8361>),
  Olli Kärkkäinen [ctb] (ORCID: <https://orcid.org/0000-0003-0825-4956>),
  Artur Sannikov [ctb]
Maintainer: Vilhelm Suksi <vksuks@utu.fi>