Package: nethet 1.39.0
nethet: A bioconductor package for high-dimensional exploration of biological network heterogeneity
Package nethet is an implementation of statistical solid methodology enabling the analysis of network heterogeneity from high-dimensional data. It combines several implementations of recent statistical innovations useful for estimation and comparison of networks in a heterogeneous, high-dimensional setting. In particular, we provide code for formal two-sample testing in Gaussian graphical models (differential network and GGM-GSA; Stadler and Mukherjee, 2013, 2014) and make a novel network-based clustering algorithm available (mixed graphical lasso, Stadler and Mukherjee, 2013).
Authors:
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nethet.pdf |nethet.html✨
nethet/json (API)
NEWS
# Install 'nethet' in R: |
install.packages('nethet', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:nethet-1.37.0(bioc 3.20)nethet-1.36.0(bioc 3.19)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 25 days agofrom:585f30a86a. Checks:OK: 1 WARNING: 8. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Oct 30 2024 |
R-4.5-win-x86_64 | WARNING | Oct 30 2024 |
R-4.5-linux-x86_64 | WARNING | Oct 30 2024 |
R-4.4-win-x86_64 | WARNING | Oct 30 2024 |
R-4.4-mac-x86_64 | WARNING | Oct 30 2024 |
R-4.4-mac-aarch64 | WARNING | Oct 30 2024 |
R-4.3-win-x86_64 | WARNING | Oct 30 2024 |
R-4.3-mac-x86_64 | WARNING | Oct 30 2024 |
R-4.3-mac-aarch64 | WARNING | Oct 30 2024 |
Exports:aggpvalbwprun_mixglassodiffnet_multisplitdiffnet_singlesplitdiffregr_multisplitdiffregr_singlesplitdot_plotexport_networkgenerate_2networksgenerate_inv_covggmgsa_multisplitgsea.irizhet_cv_glassoinvcov2parcorinvcov2parcor_arraylogratiomixglassoplot_2networksscatter_plotscreen_aic.glassoscreen_bic.glassoscreen_cv.glassoscreen_cv1se.lassoscreen_cvfix.lassoscreen_cvmin.lassoscreen_cvsqrt.lassoscreen_cvtrunc.lassosim_mixsim_mix_networks
Dependencies:BiobaseBiocGenericsBiocManagerclicodacodetoolscolorspaceCompQuadFormcorpcorcpp11DBIfansifarverfdrtoolforeachGeneNetggmggplot2glassoglmnetgluegraphGSAgtablehugeICSICSNPigraphisobanditeratorslabelinglatticelifecyclelimmalongitudinalmagrittrMASSMatrixmclustmgcvminqamitoolsmulttestmunsellmvtnormnetworknlmenumDerivpillarpkgconfigR6RColorBrewerRcppRcppArmadilloRcppEigenrlangscalesshapestatmodstatnet.commonsurveysurvivaltibbleutf8vctrsviridisLitewithr