Package: metapod 1.13.0

Aaron Lun

metapod: Meta-Analyses on P-Values of Differential Analyses

Implements a variety of methods for combining p-values in differential analyses of genome-scale datasets. Functions can combine p-values across different tests in the same analysis (e.g., genomic windows in ChIP-seq, exons in RNA-seq) or for corresponding tests across separate analyses (e.g., replicated comparisons, effect of different treatment conditions). Support is provided for handling log-transformed input p-values, missing values and weighting where appropriate.

Authors:Aaron Lun [aut, cre]

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NEWS

# Install 'metapod' in R:
install.packages('metapod', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Uses libs:
  • c++– GNU Standard C++ Library v3

On BioConductor:metapod-1.13.0(bioc 3.20)metapod-1.12.0(bioc 3.19)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

bioconductor-package

22 exports 4.58 score 1 dependencies 44 dependents

Last updated 2 months agofrom:107182538f

Exports:averageGroupedStatsaverageParallelStatscombineGroupedPValuescombineParallelPValuescountGroupedDirectioncountParallelDirectiongroupedBergergroupedFishergroupedHolmMingroupedPearsongroupedSimesgroupedStouffergroupedWilkinsonparallelBergerparallelFisherparallelHolmMinparallelPearsonparallelSimesparallelStoufferparallelWilkinsonsummarizeGroupedDirectionsummarizeParallelDirection

Dependencies:Rcpp

Meta-analyses on p-values of various differential tests

Rendered fromoverview.Rmdusingknitr::rmarkdownon Jun 30 2024.

Last update: 2021-05-12
Started: 2020-11-02