Package: metapod 1.13.0

Aaron Lun

metapod: Meta-Analyses on P-Values of Differential Analyses

Implements a variety of methods for combining p-values in differential analyses of genome-scale datasets. Functions can combine p-values across different tests in the same analysis (e.g., genomic windows in ChIP-seq, exons in RNA-seq) or for corresponding tests across separate analyses (e.g., replicated comparisons, effect of different treatment conditions). Support is provided for handling log-transformed input p-values, missing values and weighting where appropriate.

Authors:Aaron Lun [aut, cre]

metapod_1.13.0.tar.gz
metapod_1.13.0.zip(r-4.5)metapod_1.13.0.zip(r-4.4)metapod_1.13.0.zip(r-4.3)
metapod_1.13.0.tgz(r-4.4-x86_64)metapod_1.13.0.tgz(r-4.4-arm64)metapod_1.13.0.tgz(r-4.3-x86_64)metapod_1.13.0.tgz(r-4.3-arm64)
metapod_1.13.0.tar.gz(r-4.5-noble)metapod_1.13.0.tar.gz(r-4.4-noble)
metapod_1.13.0.tgz(r-4.4-emscripten)metapod_1.13.0.tgz(r-4.3-emscripten)
metapod.pdf |metapod.html
metapod/json (API)
NEWS

# Install 'metapod' in R:
install.packages('metapod', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Uses libs:
  • c++– GNU Standard C++ Library v3

On BioConductor:metapod-1.13.0(bioc 3.20)metapod-1.12.0(bioc 3.19)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

multiplecomparisondifferentialpeakcalling

22 exports 6.60 score 1 dependencies 44 dependents 13 scripts 7.8k downloads

Last updated 6 months agofrom:107182538f. Checks:OK: 1 NOTE: 8. Indexed: yes.

TargetResultDate
Doc / VignettesOKSep 28 2024
R-4.5-win-x86_64NOTESep 28 2024
R-4.5-linux-x86_64NOTESep 28 2024
R-4.4-win-x86_64NOTESep 28 2024
R-4.4-mac-x86_64NOTESep 28 2024
R-4.4-mac-aarch64NOTESep 28 2024
R-4.3-win-x86_64NOTESep 28 2024
R-4.3-mac-x86_64NOTESep 28 2024
R-4.3-mac-aarch64NOTESep 28 2024

Exports:averageGroupedStatsaverageParallelStatscombineGroupedPValuescombineParallelPValuescountGroupedDirectioncountParallelDirectiongroupedBergergroupedFishergroupedHolmMingroupedPearsongroupedSimesgroupedStouffergroupedWilkinsonparallelBergerparallelFisherparallelHolmMinparallelPearsonparallelSimesparallelStoufferparallelWilkinsonsummarizeGroupedDirectionsummarizeParallelDirection

Dependencies:Rcpp

Meta-analyses on p-values of various differential tests

Rendered fromoverview.Rmdusingknitr::rmarkdownon Sep 28 2024.

Last update: 2021-05-12
Started: 2020-11-02