Package: metapod 1.15.0

Aaron Lun

metapod: Meta-Analyses on P-Values of Differential Analyses

Implements a variety of methods for combining p-values in differential analyses of genome-scale datasets. Functions can combine p-values across different tests in the same analysis (e.g., genomic windows in ChIP-seq, exons in RNA-seq) or for corresponding tests across separate analyses (e.g., replicated comparisons, effect of different treatment conditions). Support is provided for handling log-transformed input p-values, missing values and weighting where appropriate.

Authors:Aaron Lun [aut, cre]

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NEWS

# Install 'metapod' in R:
install.packages('metapod', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Uses libs:
  • c++– GNU Standard C++ Library v3

On BioConductor:metapod-1.15.0(bioc 3.21)metapod-1.14.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

multiplecomparisondifferentialpeakcallingcpp

7.43 score 45 packages 17 scripts 7.8k downloads 22 exports 1 dependencies

Last updated 15 days agofrom:caed8d4574. Checks:1 OK, 8 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKDec 25 2024
R-4.5-win-x86_64NOTEDec 25 2024
R-4.5-linux-x86_64NOTEDec 25 2024
R-4.4-win-x86_64NOTEDec 25 2024
R-4.4-mac-x86_64NOTEDec 25 2024
R-4.4-mac-aarch64NOTEDec 25 2024
R-4.3-win-x86_64NOTEDec 25 2024
R-4.3-mac-x86_64NOTEDec 25 2024
R-4.3-mac-aarch64NOTEDec 25 2024

Exports:averageGroupedStatsaverageParallelStatscombineGroupedPValuescombineParallelPValuescountGroupedDirectioncountParallelDirectiongroupedBergergroupedFishergroupedHolmMingroupedPearsongroupedSimesgroupedStouffergroupedWilkinsonparallelBergerparallelFisherparallelHolmMinparallelPearsonparallelSimesparallelStoufferparallelWilkinsonsummarizeGroupedDirectionsummarizeParallelDirection

Dependencies:Rcpp

Meta-analyses on p-values of various differential tests

Rendered fromoverview.Rmdusingknitr::rmarkdownon Dec 25 2024.

Last update: 2021-05-12
Started: 2020-11-02