Package: metapod 1.21.0
Aaron Lun
metapod: Meta-Analyses on P-Values of Differential Analyses
Implements a variety of methods for combining p-values in differential analyses of genome-scale datasets. Functions can combine p-values across different tests in the same analysis (e.g., genomic windows in ChIP-seq, exons in RNA-seq) or for corresponding tests across separate analyses (e.g., replicated comparisons, effect of different treatment conditions). Support is provided for handling log-transformed input p-values, missing values and weighting where appropriate.
Authors:
metapod_1.21.0.tar.gz
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manual.pdf |manual.html✨
card.svg |card.png
metapod/json (API)
NEWS
| # Install 'metapod' in R: |
| install.packages('metapod', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/ltla/metapod/issues
On BioConductor:metapod-1.21.0(bioc 3.24)metapod-1.20.0(bioc 3.23)
multiplecomparisondifferentialpeakcallingcpp
Last updated from:b1a66ff483. Checks:1 WARNING, 11 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | WARNING | 149 | ||
| linux-devel-arm64 | NOTE | 179 | ||
| linux-devel-x86_64 | NOTE | 250 | ||
| source / vignettes | OK | 204 | ||
| linux-release-arm64 | NOTE | 143 | ||
| linux-release-x86_64 | NOTE | 197 | ||
| macos-release-arm64 | NOTE | 127 | ||
| macos-release-x86_64 | NOTE | 217 | ||
| macos-oldrel-arm64 | NOTE | 143 | ||
| macos-oldrel-x86_64 | NOTE | 275 | ||
| windows-devel | NOTE | 113 | ||
| windows-release | NOTE | 139 | ||
| windows-oldrel | NOTE | 108 | ||
| wasm-release | OK | 111 |
Exports:averageGroupedStatsaverageParallelStatscombineGroupedPValuescombineParallelPValuescountGroupedDirectioncountParallelDirectiongroupedBergergroupedFishergroupedHolmMingroupedPearsongroupedSimesgroupedStouffergroupedWilkinsonparallelBergerparallelFisherparallelHolmMinparallelPearsonparallelSimesparallelStoufferparallelWilkinsonsummarizeGroupedDirectionsummarizeParallelDirection
Dependencies:Rcpp
