Package: meshes 1.39.1

Guangchuang Yu

meshes: MeSH Enrichment and Semantic analyses

Provides tools for MeSH (Medical Subject Headings) enrichment and semantic similarity analysis. The package uses MeSH term annotations linked to Entrez Gene identifiers through gendoo, gene2pubmed and RBBH, enabling over-representation analysis, gene set enrichment analysis and semantic comparison of gene lists or ranked expression profiles. It implements Resnik, Schlicker, Jiang, Lin and Wang similarity methods for comparing MeSH terms, genes and gene groups across more than 70 species.

Authors:Guangchuang Yu [aut, cre]

meshes_1.39.1.tar.gz
meshes_1.39.1.zip(r-4.7)meshes_1.39.1.zip(r-4.6)meshes_1.39.1.zip(r-4.5)
meshes_1.39.1.tgz(r-4.6-any)meshes_1.39.1.tgz(r-4.5-any)
meshes_1.39.1.tar.gz(r-4.7-any)meshes_1.39.1.tar.gz(r-4.6-any)
meshes_1.39.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
meshes/json (API)

# Install 'meshes' in R:

install.packages('meshes', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/yulab-smu/meshes/issues

Datasets:

hsamd - DATA Sets
meshtbl - DATA Sets

On BioConductor:meshes-1.39.0(bioc 3.24)meshes-1.38.0(bioc 3.23)

annotation clustering multiplecomparison software enrichment-analysis medical-subject-headings semantic-similarity quarto

7.40 score 12 stars 56 scripts 3 mentions 8 exports 65 dependencies

Last updated from:5b46b9de43. Checks:1 ERROR, 9 OK. Indexed: yes.

Target	Result	Time
bioc-checks	ERROR	177
linux-devel-x86_64	OK	293
source / vignettes	OK	227
linux-release-x86_64	OK	309
macos-release-arm64	OK	214
macos-oldrel-arm64	OK	304
windows-devel	OK	217
windows-release	OK	203
windows-oldrel	OK	200
wasm-release	OK	153