NEWS

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meshes 1.39.2

• gseMeSH() now exposes an eps argument and forwards it to enrichit::gsea_gson(), matching the other GSEA wrappers in the family (2026-09-22, Tue)
• expose an explicit seed argument on gseMeSH() and forward it to enrichit::gsea_gson() (2026-08-15, Fri)
  • set it to a number (or TRUE for a fixed default seed) to get identical GSEA results across runs, FALSE (default) draws a fresh seed on each run; set.seed() before the call still works
  • pvalueCutoff is applied to both pvalue and p.adjust inside enrichit::gsea_gson() (requires enrichit >= 0.2.2), matching the historical clusterProfiler/DOSE double-filtering behavior

meshes 1.39.1

• use Quarto for the package vignette and keep examples in the online book (2026-06-30, Tue)
• update package description to better summarize supported data and analyses (2026-06-30, Tue)
• improve performance of gene-to-MeSH lookup and MeSH ancestor/offspring traversal (2026-06-30, Tue)
• validate MeSHDb resources before querying to report clearer errors for incompatible AnnotationHub results (2026-06-30, Tue)

meshes 1.38.0

• Bioconductor RELEASE_3_23 (2026-04-29, Wed)

meshes 1.37.1

• use 'enrichit' as engine for enrichment analysis (2025-12-07, Sun)

meshes 1.36.0

• Bioconductor RELEASE_3_22 (2025-11-01, Sat)

meshes 1.34.0

• Bioconductor RELEASE_3_21 (2025-04-17, Thu)

meshes 1.32.0

• Bioconductor RELEASE_3_20 (2024-10-30, Wed)

meshes 1.31.1

• use yulab.utils::yulab_msg() for startup message (2024-07-26, Fri)

meshes 1.30.0

• Bioconductor RELEASE_3_19 (2024-05-15, Wed)

meshes 1.28.0

• Bioconductor RELEASE_3_18 (2023-10-25, Wed)

meshes 1.24.0

• Bioconductor RELEASE_3_16 (2022-11-02, Wed)

meshes 1.19.3

• cache mesh db and table (2021-09-01, Wed)

meshes 1.19.2

• import yulab.utils (2021-8-19, Thu)

meshes 1.19.1

• remove MeSH.db package and use AnnotationHub to get MeSHDb databases (2021-8-13, Fri)

meshes 1.18.0

• Bioconductor 3.13 release

meshes 1.16.0

• Bioconductor 3.12 release (2020-10-28, Wed)

meshes 1.14.0

• Bioconductor 3.11 release

meshes 1.12.0

• Bioconductor 3.10 release