Package: makecdfenv 1.81.0

James W. MacDonald

makecdfenv: CDF Environment Maker

This package has two functions. One reads a Affymetrix chip description file (CDF) and creates a hash table environment containing the location/probe set membership mapping. The other creates a package that automatically loads that environment.

Authors:Rafael A. Irizarry <[email protected]>, Laurent Gautier <[email protected]>, Wolfgang Huber <[email protected]>, Ben Bolstad <[email protected]>

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makecdfenv.pdf |makecdfenv.html✨
makecdfenv/json (API)

# Install 'makecdfenv' in R:

install.packages('makecdfenv', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Uses libs:

zlib– Compression library

On BioConductor:makecdfenv-1.81.0(bioc 3.20)makecdfenv-1.80.0(bioc 3.19)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

bioconductor-package

16 exports 2.80 score 7 dependencies 2 dependents 11 mentions

Last updated 2 months agofrom:7cb4573e04

Exports:getInfoInFile make.cdf.env make.cdf.package name.levels name.levels<-pbase pbase.levels pbase.levels<-pbase<-pmormm read.cdffile show tbase tbase.levels tbase.levels<-tbase<-

Dependencies:affy affyio Biobase BiocGenerics BiocManager preprocessCore zlibbioc

makecdfenv primer

Rendered frommakecdfenv.Rnwusingutils::Sweaveon Jul 03 2024.

Last update: 2013-10-21
Started: 2013-10-21

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Class Cdf	atom atom,Cdf-method atom<- atom<-,Cdf-method Cdf-class name.levels name.levels,Cdf-method name.levels<- name.levels<-,Cdf-method pbase pbase,Cdf-method pbase.levels pbase.levels,Cdf-method pbase.levels<- pbase.levels<-,Cdf-method pbase<- pbase<-,Cdf-method show,Cdf-method tbase tbase,Cdf-method tbase.levels tbase.levels,Cdf-method tbase.levels<- tbase.levels<-,Cdf-method tbase<- tbase<-,Cdf-method
get information from Affymetrix data files	getInfoInFile
CDF Environment Maker	make.cdf.env
CDF Environment Package Maker	make.cdf.package
PM or MM	pmormm
Read a CDF file	read.cdffile