Package: makecdfenv 1.83.0
James W. MacDonald
makecdfenv: CDF Environment Maker
This package has two functions. One reads a Affymetrix chip description file (CDF) and creates a hash table environment containing the location/probe set membership mapping. The other creates a package that automatically loads that environment.
Authors:
makecdfenv_1.83.0.tar.gz
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makecdfenv.pdf |makecdfenv.html✨
makecdfenv/json (API)
| # Install 'makecdfenv' in R: |
| install.packages('makecdfenv', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:makecdfenv-1.83.0(bioc 3.21)makecdfenv-1.82.0(bioc 3.20)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
onechanneldataimportpreprocessingzlib
Last updated 2 months agofrom:d0be981219. Checks:OK: 1 WARNING: 1 NOTE: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Dec 06 2024 |
| R-4.5-win-x86_64 | NOTE | Dec 06 2024 |
| R-4.5-linux-x86_64 | WARNING | Dec 06 2024 |
| R-4.4-win-x86_64 | NOTE | Dec 06 2024 |
| R-4.4-mac-x86_64 | NOTE | Dec 06 2024 |
| R-4.4-mac-aarch64 | NOTE | Dec 06 2024 |
| R-4.3-win-x86_64 | NOTE | Dec 06 2024 |
| R-4.3-mac-x86_64 | NOTE | Dec 06 2024 |
| R-4.3-mac-aarch64 | NOTE | Dec 06 2024 |
Exports:getInfoInFilemake.cdf.envmake.cdf.packagename.levelsname.levels<-pbasepbase.levelspbase.levels<-pbase<-pmormmread.cdffileshowtbasetbase.levelstbase.levels<-tbase<-
Dependencies:affyaffyioBiobaseBiocGenericsBiocManagergenericspreprocessCorezlibbioc
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Class Cdf | atom atom,Cdf-method atom<- atom<-,Cdf-method Cdf-class name.levels name.levels,Cdf-method name.levels<- name.levels<-,Cdf-method pbase pbase,Cdf-method pbase.levels pbase.levels,Cdf-method pbase.levels<- pbase.levels<-,Cdf-method pbase<- pbase<-,Cdf-method show,Cdf-method tbase tbase,Cdf-method tbase.levels tbase.levels,Cdf-method tbase.levels<- tbase.levels<-,Cdf-method tbase<- tbase<-,Cdf-method |
| get information from Affymetrix data files | getInfoInFile |
| CDF Environment Maker | make.cdf.env |
| CDF Environment Package Maker | make.cdf.package |
| PM or MM | pmormm |
| Read a CDF file | read.cdffile |
