Package: makecdfenv 1.89.0

James W. MacDonald

makecdfenv: CDF Environment Maker

This package has two functions. One reads a Affymetrix chip description file (CDF) and creates a hash table environment containing the location/probe set membership mapping. The other creates a package that automatically loads that environment.

Authors:Rafael A. Irizarry <[email protected]>, Laurent Gautier <[email protected]>, Wolfgang Huber <[email protected]>, Ben Bolstad <[email protected]>

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manual.pdf |manual.html✨
card.svg |card.png
makecdfenv/json (API)

# Install 'makecdfenv' in R:
install.packages('makecdfenv', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))
Uses libs:
  • zlib– Compression library

On BioConductor:makecdfenv-1.89.0(bioc 3.24)makecdfenv-1.88.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

onechanneldataimportpreprocessingzlib

5.36 score 1 packages 38 scripts 672 downloads 11 mentions 16 exports 7 dependencies

Last updated from:1f475d4d35. Checks:1 ERROR, 4 WARNING, 2 OK, 7 NOTE. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksERROR118
linux-devel-arm64WARNING120
linux-devel-x86_64WARNING142
source / vignettesOK163
linux-release-arm64WARNING119
linux-release-x86_64WARNING177
macos-release-arm64NOTE104
macos-release-x86_64NOTE291
macos-oldrel-arm64NOTE113
macos-oldrel-x86_64NOTE178
windows-develNOTE121
windows-releaseNOTE118
windows-oldrelNOTE119
wasm-releaseOK106

Exports:getInfoInFilemake.cdf.envmake.cdf.packagename.levelsname.levels<-pbasepbase.levelspbase.levels<-pbase<-pmormmread.cdffileshowtbasetbase.levelstbase.levels<-tbase<-

Dependencies:affyaffyioBiobaseBiocGenericsBiocManagergenericspreprocessCore

makecdfenv primer

Rendered frommakecdfenv.Rnwusingutils::Sweaveon May 20 2026.

Last update: 2013-10-21
Started: 2013-10-21

Readme and manuals

Help Manual

Help pageTopics
Class Cdfatom atom,Cdf-method atom<- atom<-,Cdf-method Cdf-class name.levels name.levels,Cdf-method name.levels<- name.levels<-,Cdf-method pbase pbase,Cdf-method pbase.levels pbase.levels,Cdf-method pbase.levels<- pbase.levels<-,Cdf-method pbase<- pbase<-,Cdf-method show,Cdf-method tbase tbase,Cdf-method tbase.levels tbase.levels,Cdf-method tbase.levels<- tbase.levels<-,Cdf-method tbase<- tbase<-,Cdf-method
get information from Affymetrix data filesgetInfoInFile
CDF Environment Makermake.cdf.env
CDF Environment Package Makermake.cdf.package
PM or MMpmormm
Read a CDF fileread.cdffile