Package: makecdfenv 1.89.0

James W. MacDonald

makecdfenv: CDF Environment Maker

This package has two functions. One reads a Affymetrix chip description file (CDF) and creates a hash table environment containing the location/probe set membership mapping. The other creates a package that automatically loads that environment.

Authors:Rafael A. Irizarry <[email protected]>, Laurent Gautier <[email protected]>, Wolfgang Huber <[email protected]>, Ben Bolstad <[email protected]>

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manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
makecdfenv/json (API)

# Install 'makecdfenv' in R:

install.packages('makecdfenv', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Uses libs:

zlib– Compression library

On BioConductor:makecdfenv-1.89.0(bioc 3.24)makecdfenv-1.88.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

onechannel dataimport preprocessing zlib

5.36 score 1 packages 38 scripts 11 mentions 16 exports 7 dependencies

Last updated from:1f475d4d35. Checks:1 ERROR, 4 WARNING, 2 OK, 7 NOTE. Indexed: yes.

Target	Result	Time
bioc-checks	ERROR	145
linux-devel-arm64	WARNING	144
linux-devel-x86_64	WARNING	185
source / vignettes	OK	173
linux-release-arm64	WARNING	172
linux-release-x86_64	WARNING	151
macos-release-arm64	NOTE	120
macos-release-x86_64	NOTE	316
macos-oldrel-arm64	NOTE	88
macos-oldrel-x86_64	NOTE	227
windows-devel	NOTE	94
windows-release	NOTE	86
windows-oldrel	NOTE	80
wasm-release	OK	99

Exports:getInfoInFile make.cdf.env make.cdf.package name.levels name.levels<-pbase pbase.levels pbase.levels<-pbase<-pmormm read.cdffile show tbase tbase.levels tbase.levels<-tbase<-

Dependencies:affy affyio Biobase BiocGenerics BiocManager generics preprocessCore

makecdfenv primer

Introduction | Creating a CDF package | Creating CDF environments | Naming of CDF packages and environments | Location-ProbeSet Mapping

Rendered frommakecdfenv.Rnwusingutils::Sweave

Last update: 2013-10-21
Started: 2013-10-21

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Class Cdf	atom atom,Cdf-method atom<- atom<-,Cdf-method Cdf-class name.levels name.levels,Cdf-method name.levels<- name.levels<-,Cdf-method pbase pbase,Cdf-method pbase.levels pbase.levels,Cdf-method pbase.levels<- pbase.levels<-,Cdf-method pbase<- pbase<-,Cdf-method show,Cdf-method tbase tbase,Cdf-method tbase.levels tbase.levels,Cdf-method tbase.levels<- tbase.levels<-,Cdf-method tbase<- tbase<-,Cdf-method
get information from Affymetrix data files	getInfoInFile
CDF Environment Maker	make.cdf.env
CDF Environment Package Maker	make.cdf.package
PM or MM	pmormm
Read a CDF file	read.cdffile