{
  "_id": "6abb9d4999f7aa8c6aa46d73",
  "Package": "makecdfenv",
  "Version": "1.89.0",
  "Date": "2006-03-06",
  "Title": "CDF Environment Maker",
  "Author": "Rafael A. Irizarry <rafa@jhu.edu>, Laurent Gautier\n<laurent@cbs.dtu.dk>, Wolfgang Huber\n<w.huber@dkfz-heidelberg.de>, Ben Bolstad <bmb@bmbolstad.com>",
  "Maintainer": "James W. MacDonald <jmacdon@u.washington.edu>",
  "Description": "This package has two functions. One reads a Affymetrix\nchip description file (CDF) and creates a hash table\nenvironment containing the location/probe set membership\nmapping. The other creates a package that automatically loads\nthat environment.",
  "License": "GPL (>= 2)",
  "LazyLoad": "yes",
  "biocViews": "OneChannel, DataImport, Preprocessing",
  "Config/pak/sysreqs": "zlib1g-dev",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:30:06 UTC",
  "RemoteUrl": "https://github.com/bioc/makecdfenv",
  "RemoteRef": "HEAD",
  "RemoteSha": "1f475d4d3534a80d39bfb09a8d0bc6b92989ed51",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-09-29 09:54:31 UTC",
    "User": "root"
  },
  "_user": "bioc",
  "_type": "src",
  "_file": "makecdfenv_1.89.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/6e08b8c6f517e0ad77e8cf5cbe0506cf2aab3bdfc01d16578f0521c7a51dc8f4",
  "_filesize": 3391715,
  "_sha256": "6e08b8c6f517e0ad77e8cf5cbe0506cf2aab3bdfc01d16578f0521c7a51dc8f4",
  "_expires": "2027-01-07T11:13:11.000Z",
  "_created": "2026-09-29T09:54:31.000Z",
  "_published": "2026-09-29T11:13:13.471Z",
  "_bioccheck": {
    "error": 2,
    "warning": 1,
    "note": 13
  },
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/36551765865",
  "_status": "success",
  "_upstream": "https://github.com/bioc/makecdfenv",
  "_commit": {
    "id": "1f475d4d3534a80d39bfb09a8d0bc6b92989ed51",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n",
    "time": 1777379406
  },
  "_maintainer": {
    "name": "James W. MacDonald",
    "email": "jmacdon@u.washington.edu",
    "login": "jmacdon",
    "description": "",
    "uuid": 5940924
  },
  "_distro": "resolute",
  "_jobs": [
    {
      "job": 109352897193,
      "time": 158,
      "config": "bioc-checks",
      "r": "4.6.1",
      "check": "ERROR",
      "artifact": "11025328263"
    },
    {
      "job": 109352897300,
      "time": 144,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "11025018734"
    },
    {
      "job": 109352897212,
      "time": 271,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "11025413197"
    },
    {
      "job": 109352897313,
      "time": 137,
      "config": "linux-release-arm64",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "11025417877"
    },
    {
      "job": 109352897289,
      "time": 227,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "11024573425"
    },
    {
      "job": 109352897270,
      "time": 97,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "11028443640"
    },
    {
      "job": 109352897326,
      "time": 142,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "11029409162"
    },
    {
      "job": 109352897280,
      "time": 126,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "11028338819"
    },
    {
      "job": 109352897402,
      "time": 209,
      "config": "macos-release-x86_64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "11028483943"
    },
    {
      "job": 109351484198,
      "time": 239,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11024808859"
    },
    {
      "job": 109352897220,
      "time": 104,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "11024519079"
    },
    {
      "job": 109352897217,
      "time": 190,
      "config": "windows-devel-arm64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "11024822936"
    },
    {
      "job": 109352897205,
      "time": 115,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "11025148590"
    },
    {
      "job": 109352897299,
      "time": 87,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "11025343107"
    },
    {
      "job": 109352897306,
      "time": 219,
      "config": "windows-release-arm64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "11025388488"
    },
    {
      "job": 109352897321,
      "time": 130,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "11025058695"
    }
  ],
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 2.6.0",
      "role": "Depends"
    },
    {
      "package": "affyio",
      "role": "Depends"
    },
    {
      "package": "Biobase",
      "role": "Imports"
    },
    {
      "package": "affy",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    }
  ],
  "_owner": "bioc",
  "_selfowned": true,
  "_usedby": 1,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 2
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.89.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.88.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "onechannel",
    "dataimport",
    "preprocessing",
    "zlib"
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "followers": 470,
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
    "count": 880,
    "source": "https://www.bioconductor.org/packages/stats/bioc/makecdfenv"
  },
  "_mentions": 11,
  "_searchresults": 0,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/makecdfenv.html",
    "extra/manual.pdf"
  ],
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "getInfoInFile",
    "make.cdf.env",
    "make.cdf.package",
    "name.levels",
    "name.levels<-",
    "pbase",
    "pbase.levels",
    "pbase.levels<-",
    "pbase<-",
    "pmormm",
    "read.cdffile",
    "show",
    "tbase",
    "tbase.levels",
    "tbase.levels<-",
    "tbase<-"
  ],
  "_help": [
    {
      "page": "Cdf-class",
      "title": "Class Cdf",
      "topics": [
        "atom",
        "atom,Cdf-method",
        "atom<-",
        "atom<-,Cdf-method",
        "Cdf-class",
        "name.levels",
        "name.levels,Cdf-method",
        "name.levels<-",
        "name.levels<-,Cdf-method",
        "pbase",
        "pbase,Cdf-method",
        "pbase.levels",
        "pbase.levels,Cdf-method",
        "pbase.levels<-",
        "pbase.levels<-,Cdf-method",
        "pbase<-",
        "pbase<-,Cdf-method",
        "show,Cdf-method",
        "tbase",
        "tbase,Cdf-method",
        "tbase.levels",
        "tbase.levels,Cdf-method",
        "tbase.levels<-",
        "tbase.levels<-,Cdf-method",
        "tbase<-",
        "tbase<-,Cdf-method"
      ]
    },
    {
      "page": "getInfoInAffyFile",
      "title": "get information from Affymetrix data files",
      "topics": [
        "getInfoInFile"
      ]
    },
    {
      "page": "make.cdf.env",
      "title": "CDF Environment Maker",
      "topics": [
        "make.cdf.env"
      ]
    },
    {
      "page": "make.cdf.package",
      "title": "CDF Environment Package Maker",
      "topics": [
        "make.cdf.package"
      ]
    },
    {
      "page": "pmormm",
      "title": "PM or MM",
      "topics": [
        "pmormm"
      ]
    },
    {
      "page": "read.cdffile",
      "title": "Read a CDF file",
      "topics": [
        "read.cdffile"
      ]
    }
  ],
  "_rundeps": [
    "affy",
    "affyio",
    "Biobase",
    "BiocGenerics",
    "BiocManager",
    "generics",
    "preprocessCore"
  ],
  "_sysdeps": [
    {
      "shlib": "libz",
      "package": "zlib1g",
      "headers": "zlib1g-dev",
      "source": "zlib",
      "version": "1:1.3.dfsg+really1.3.1-1ubuntu3.1",
      "name": "zlib",
      "homepage": "http://zlib.net/",
      "description": "compression library - runtime"
    }
  ],
  "_vignettes": [
    {
      "source": "makecdfenv.Rnw",
      "filename": "makecdfenv.pdf",
      "title": "makecdfenv primer",
      "engine": "utils::Sweave",
      "headings": [
        "Introduction",
        "Creating a CDF package",
        "Creating CDF environments",
        "Naming of CDF packages and environments",
        "Location-ProbeSet Mapping"
      ],
      "created": "2013-10-21 16:59:45",
      "modified": "2013-10-21 16:59:45",
      "commits": 1
    }
  ],
  "_score": 4.778151250383644,
  "_indexed": true,
  "_nocasepkg": "makecdfenv",
  "_universes": [
    "bioc",
    "jmacdon"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.89.0",
      "date": "2026-09-29T09:56:55.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "1f475d4d3534a80d39bfb09a8d0bc6b92989ed51",
      "fileid": "https://r2.ropensci.org/899a518d350dbd52d8ebcd9c6a43531d1736c541cf581414ba0948a8659d4d21",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/36551765865"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.89.0",
      "date": "2026-09-29T09:58:59.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "1f475d4d3534a80d39bfb09a8d0bc6b92989ed51",
      "fileid": "https://r2.ropensci.org/d3670665f48c6b6f26692342eeae8cb663af589d1245d5848bb1974507680a7a",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/36551765865"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.89.0",
      "date": "2026-09-29T09:56:55.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "1f475d4d3534a80d39bfb09a8d0bc6b92989ed51",
      "fileid": "https://r2.ropensci.org/6663a184d3ed27b9e6c79325a62de46409791717db1bcb5d38f2d3451d292263",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/36551765865"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.89.0",
      "date": "2026-09-29T09:58:12.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "1f475d4d3534a80d39bfb09a8d0bc6b92989ed51",
      "fileid": "https://r2.ropensci.org/508ce5d9b4d756957bfc2f11ad5e4e563310f935c473500c0a19a8f3c280332c",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/36551765865"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.89.0",
      "date": "2026-09-29T11:10:29.000Z",
      "arch": "aarch64",
      "commit": "1f475d4d3534a80d39bfb09a8d0bc6b92989ed51",
      "fileid": "https://r2.ropensci.org/4be3e021fd0ae1e333f278632c007874fa387f85d16c9e1baf2d9756eaded945",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/36551765865"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.89.0",
      "date": "2026-09-29T11:11:32.000Z",
      "arch": "x86_64",
      "commit": "1f475d4d3534a80d39bfb09a8d0bc6b92989ed51",
      "fileid": "https://r2.ropensci.org/9ed75dcf52435c20dc3f6d7f2c1936de6b38d0e7a39a0f0cf11041c166d36516",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/36551765865"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.89.0",
      "date": "2026-09-29T11:11:12.000Z",
      "arch": "aarch64",
      "commit": "1f475d4d3534a80d39bfb09a8d0bc6b92989ed51",
      "fileid": "https://r2.ropensci.org/b62fd2eaced67e1439bc724a3610dbcd9cebddf225f9a18520194da5c9e162eb",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/36551765865"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.89.0",
      "date": "2026-09-29T11:11:58.000Z",
      "arch": "x86_64",
      "commit": "1f475d4d3534a80d39bfb09a8d0bc6b92989ed51",
      "fileid": "https://r2.ropensci.org/845be0822379637f3e5351568945a2c935f695ba0da6faf1c02b80cd51cbb4ef",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/36551765865"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.89.0",
      "date": "2026-09-29T09:56:39.000Z",
      "arch": "emscripten",
      "commit": "1f475d4d3534a80d39bfb09a8d0bc6b92989ed51",
      "fileid": "https://r2.ropensci.org/cdda2ddd876a1f96976b708953b4fc0e202898fb18e5c3695dd87ad2ff968a0e",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/36551765865"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.89.0",
      "date": "2026-09-29T09:57:31.000Z",
      "arch": "aarch64",
      "commit": "1f475d4d3534a80d39bfb09a8d0bc6b92989ed51",
      "fileid": "https://r2.ropensci.org/6e617bebd77ec45648052a75233a10d4f32342490b6f04f84b53f869dc29357b",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/36551765865"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.89.0",
      "date": "2026-09-29T09:55:37.000Z",
      "arch": "x86_64",
      "commit": "1f475d4d3534a80d39bfb09a8d0bc6b92989ed51",
      "fileid": "https://r2.ropensci.org/26ab112672a20cb225fe2ef3b2c895202b50f4de85abc8360312bde287486272",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/36551765865"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.89.0",
      "date": "2026-09-29T09:55:51.000Z",
      "arch": "x86_64",
      "commit": "1f475d4d3534a80d39bfb09a8d0bc6b92989ed51",
      "fileid": "https://r2.ropensci.org/09ac498dd344753eb9bc3f590bdea6d40c1db3254ebc0ea98b181dd287357f15",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/36551765865"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.89.0",
      "date": "2026-09-29T09:58:03.000Z",
      "arch": "aarch64",
      "commit": "1f475d4d3534a80d39bfb09a8d0bc6b92989ed51",
      "fileid": "https://r2.ropensci.org/de40f77f2784d06f9b310be4905e90b734aacc97db97632d12e3fa3cf4cb2e00",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/36551765865"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.89.0",
      "date": "2026-09-29T09:56:10.000Z",
      "arch": "x86_64",
      "commit": "1f475d4d3534a80d39bfb09a8d0bc6b92989ed51",
      "fileid": "https://r2.ropensci.org/66fce2f117e1b4d6501bd04d25e78845598c0eb7fdb9ccfaf173db33f96c2c68",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/36551765865"
    }
  ]
}