Package: ipdDb 1.31.0

Steffen Klasberg

ipdDb: IPD IMGT/HLA and IPD KIR database for Homo sapiens

All alleles from the IPD IMGT/HLA <https://www.ebi.ac.uk/ipd/imgt/hla/> and IPD KIR <https://www.ebi.ac.uk/ipd/kir/> database for Homo sapiens. Reference: Robinson J, Maccari G, Marsh SGE, Walter L, Blokhuis J, Bimber B, Parham P, De Groot NG, Bontrop RE, Guethlein LA, and Hammond JA KIR Nomenclature in non-human species Immunogenetics (2018), in preparation.

Authors:Steffen Klasberg

ipdDb_1.31.0.tar.gz
ipdDb_1.31.0.zip(r-4.7)ipdDb_1.31.0.zip(r-4.6)ipdDb_1.31.0.zip(r-4.5)
ipdDb_1.31.0.tgz(r-4.6-any)ipdDb_1.31.0.tgz(r-4.5-any)
ipdDb_1.31.0.tar.gz(r-4.7-any)ipdDb_1.31.0.tar.gz(r-4.6-any)
ipdDb_1.31.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
ipdDb/json (API)

# Install 'ipdDb' in R:

install.packages('ipdDb', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/dkms-lsl/ipddb/issues

On BioConductor:ipdDb-1.31.0(bioc 3.24)ipdDb-1.30.0(bioc 3.23)

genomicvariation sequencematching variantannotation datarepresentation annotationhubsoftware

3.30 score 4 scripts 11 exports 58 dependencies

Last updated from:e0f07b9fe9. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.

Target	Result	Time
bioc-checks	ERROR	170
linux-devel-x86_64	NOTE	297
source / vignettes	OK	216
linux-release-x86_64	NOTE	257
macos-release-arm64	NOTE	377
macos-oldrel-arm64	NOTE	360
windows-devel	NOTE	187
windows-release	NOTE	203
windows-oldrel	NOTE	341
wasm-release	OK	119

Exports:columns getAlleles getClosestComplete getLoci getReference getStructure keys keytypes loadHlaData loadKirData select

Dependencies:AnnotationDbi AnnotationHub askpass assertthat Biobase BiocBaseUtils BiocFileCache BiocGenerics BiocManager BiocVersion Biostrings bit bit64 blob cachem cli cpp11 crayon curl DBI dbplyr dplyr fastmap filelock generics GenomicRanges glue httr httr2 IRanges jsonlite KEGGREST lifecycle magrittr memoise mime openssl pillar pkgconfig png purrr R6 rappdirs rlang RSQLite S4Vectors Seqinfo stringi stringr sys tibble tidyr tidyselect utf8 vctrs withr XVector yaml

ipdDb

Rendered fromReadme.Rmdusingknitr::rmarkdown

Last update: 2018-07-05
Started: 2018-07-05

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Get alleles	getAlleles getAlleles,IpdDb-method
Get closest full-length sequence	getClosestComplete getClosestComplete,IpdDb-method
Get loci	getLoci getLoci,IpdDb-method
Get reference sequences	getReference getReference,IpdDb-method
Get gene structures	getStructure getStructure,IpdDb-method
The database class for storing allele data from IPD.	.IpdDb columns columns,IpdDb-method IpdDb IpdDb-class keys keys,IpdDb-method keytypes keytypes,IpdDb-method select select,IpdDb-method
Get allele information from IPD	ipdDbPackage-package ipdDbPackage
Load the IPD IMGT/HLA database	loadHlaData
Load the IPD KIR database	loadKirData