Package: ipdDb 1.31.0

Steffen Klasberg

ipdDb: IPD IMGT/HLA and IPD KIR database for Homo sapiens

All alleles from the IPD IMGT/HLA <https://www.ebi.ac.uk/ipd/imgt/hla/> and IPD KIR <https://www.ebi.ac.uk/ipd/kir/> database for Homo sapiens. Reference: Robinson J, Maccari G, Marsh SGE, Walter L, Blokhuis J, Bimber B, Parham P, De Groot NG, Bontrop RE, Guethlein LA, and Hammond JA KIR Nomenclature in non-human species Immunogenetics (2018), in preparation.

Authors:Steffen Klasberg

ipdDb_1.31.0.tar.gz
ipdDb_1.31.0.zip(r-4.7-any)ipdDb_1.31.0.zip(r-4.6-any)ipdDb_1.31.0.zip(r-4.5-any)
ipdDb_1.31.0.tgz(r-4.6-any)ipdDb_1.31.0.tgz(r-4.5-any)
ipdDb_1.31.0.tar.gz(r-4.7-any)ipdDb_1.31.0.tar.gz(r-4.6-any)
ipdDb_1.31.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
ipdDb/json (API)

# Install 'ipdDb' in R:

install.packages('ipdDb', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/dkms-lsl/ipddb/issues

On BioConductor:ipdDb-1.31.0(bioc 3.24)ipdDb-1.30.0(bioc 3.23)

genomicvariation sequencematching variantannotation datarepresentation annotationhubsoftware

3.30 score 8 scripts 515 downloads 11 exports 59 dependencies

Last updated from:e0f07b9fe9. Checks:8 ERROR, 2 OK. Indexed: yes.

Target	Result	Time
bioc-checks	ERROR	132
linux-devel	ERROR	276
source / vignettes	OK	216
linux-release	ERROR	348
macos-release	ERROR	237
macos-oldrel	ERROR	204
windows-devel	ERROR	158
windows-release	ERROR	167
windows-oldrel	ERROR	172
wasm-release	OK	114

Exports:columns getAlleles getClosestComplete getLoci getReference getStructure keys keytypes loadHlaData loadKirData select

Dependencies:AnnotationDbi AnnotationHub askpass assertthat Biobase BiocBaseUtils BiocFileCache BiocGenerics BiocManager BiocVersion Biostrings bit bit64 blob cachem cli cpp11 crayon curl DBI dbplyr digest dplyr fastmap filelock generics GenomicRanges glue httr httr2 IRanges jsonlite KEGGREST lifecycle magrittr memoise mime openssl pillar pkgconfig png purrr R6 rappdirs rlang RSQLite S4Vectors Seqinfo stringi stringr sys tibble tidyr tidyselect utf8 vctrs withr XVector yaml

ipdDb

Rendered fromReadme.Rmdusingknitr::rmarkdown

Last update: 2018-07-05
Started: 2018-07-05

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Get alleles	getAlleles getAlleles,IpdDb-method
Get closest full-length sequence	getClosestComplete getClosestComplete,IpdDb-method
Get loci	getLoci getLoci,IpdDb-method
Get reference sequences	getReference getReference,IpdDb-method
Get gene structures	getStructure getStructure,IpdDb-method
The database class for storing allele data from IPD.	.IpdDb columns columns,IpdDb-method IpdDb IpdDb-class keys keys,IpdDb-method keytypes keytypes,IpdDb-method select select,IpdDb-method
Get allele information from IPD	ipdDbPackage-package ipdDbPackage
Load the IPD IMGT/HLA database	loadHlaData
Load the IPD KIR database	loadKirData