Package: ipdDb 1.25.0

Steffen Klasberg

ipdDb: IPD IMGT/HLA and IPD KIR database for Homo sapiens

All alleles from the IPD IMGT/HLA <https://www.ebi.ac.uk/ipd/imgt/hla/> and IPD KIR <https://www.ebi.ac.uk/ipd/kir/> database for Homo sapiens. Reference: Robinson J, Maccari G, Marsh SGE, Walter L, Blokhuis J, Bimber B, Parham P, De Groot NG, Bontrop RE, Guethlein LA, and Hammond JA KIR Nomenclature in non-human species Immunogenetics (2018), in preparation.

Authors:Steffen Klasberg

ipdDb_1.25.0.tar.gz
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ipdDb_1.25.0.tgz(r-4.4-any)ipdDb_1.25.0.tgz(r-4.3-any)
ipdDb_1.25.0.tar.gz(r-4.5-noble)ipdDb_1.25.0.tar.gz(r-4.4-noble)
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ipdDb.pdf |ipdDb.html✨
ipdDb/json (API)
NEWS

# Install 'ipdDb' in R:
install.packages('ipdDb', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/dkms-lsl/ipddb/issues

On BioConductor:ipdDb-1.23.0(bioc 3.20)ipdDb-1.22.0(bioc 3.19)

genomicvariationsequencematchingvariantannotationdatarepresentationannotationhubsoftware

3.30 score 4 scripts 380 downloads 11 exports 61 dependencies

Last updated 23 days agofrom:db4516e210. Checks:OK: 3 NOTE: 4. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 30 2024
R-4.5-winNOTEOct 31 2024
R-4.5-linuxNOTEOct 30 2024
R-4.4-winNOTEOct 31 2024
R-4.4-macNOTEOct 31 2024
R-4.3-winOKOct 31 2024
R-4.3-macOKOct 31 2024

Exports:columnsgetAllelesgetClosestCompletegetLocigetReferencegetStructurekeyskeytypesloadHlaDataloadKirDataselect

Dependencies:AnnotationDbiAnnotationHubaskpassassertthatBiobaseBiocFileCacheBiocGenericsBiocManagerBiocVersionBiostringsbitbit64blobcachemclicpp11crayoncurlDBIdbplyrdplyrfansifastmapfilelockgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesgluehttrIRangesjsonliteKEGGRESTlifecyclemagrittrmemoisemimeopensslpillarpkgconfigplogrpngpurrrR6rappdirsrlangRSQLiteS4VectorsstringistringrsystibbletidyrtidyselectUCSC.utilsutf8vctrswithrXVectoryamlzlibbioc

ipdDb

Steffen Klasberg

Rendered fromReadme.Rmdusingknitr::rmarkdownon Oct 30 2024.

Last update: 2018-07-05
Started: 2018-07-05

Readme and manuals

Help Manual

Help pageTopics
Get allelesgetAlleles getAlleles,IpdDb-method
Get closest full-length sequencegetClosestComplete getClosestComplete,IpdDb-method
Get locigetLoci getLoci,IpdDb-method
Get reference sequencesgetReference getReference,IpdDb-method
Get gene structuresgetStructure getStructure,IpdDb-method
The database class for storing allele data from IPD..IpdDb columns columns,IpdDb-method IpdDb IpdDb-class keys keys,IpdDb-method keytypes keytypes,IpdDb-method select select,IpdDb-method
Get allele information from IPDipdDbPackage-package ipdDbPackage
Load the IPD IMGT/HLA databaseloadHlaData
Load the IPD KIR databaseloadKirData