Package: ipdDb 1.23.0

Steffen Klasberg

ipdDb: IPD IMGT/HLA and IPD KIR database for Homo sapiens

All alleles from the IPD IMGT/HLA <https://www.ebi.ac.uk/ipd/imgt/hla/> and IPD KIR <https://www.ebi.ac.uk/ipd/kir/> database for Homo sapiens. Reference: Robinson J, Maccari G, Marsh SGE, Walter L, Blokhuis J, Bimber B, Parham P, De Groot NG, Bontrop RE, Guethlein LA, and Hammond JA KIR Nomenclature in non-human species Immunogenetics (2018), in preparation.

Authors:Steffen Klasberg

ipdDb_1.23.0.tar.gz
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ipdDb.pdf |ipdDb.html✨
ipdDb/json (API)
NEWS

# Install 'ipdDb' in R:

install.packages('ipdDb', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/dkms-lsl/ipddb/issues

On BioConductor:ipdDb-1.23.0(bioc 3.20)ipdDb-1.22.0(bioc 3.19)

bioconductor-package

11 exports 0.71 score 61 dependencies

Last updated 2 months agofrom:aa212844b6

Exports:columns getAlleles getClosestComplete getLoci getReference getStructure keys keytypes loadHlaData loadKirData select

Dependencies:AnnotationDbi AnnotationHub askpass assertthat Biobase BiocFileCache BiocGenerics BiocManager BiocVersion Biostrings bit bit64 blob cachem cli cpp11 crayon curl DBI dbplyr dplyr fansi fastmap filelock generics GenomeInfoDb GenomeInfoDbData GenomicRanges glue httr IRanges jsonlite KEGGREST lifecycle magrittr memoise mime openssl pillar pkgconfig plogr png purrr R6 rappdirs rlang RSQLite S4Vectors stringi stringr sys tibble tidyr tidyselect UCSC.utils utf8 vctrs withr XVector yaml zlibbioc

ipdDb

Steffen Klasberg

Rendered fromReadme.Rmdusingknitr::rmarkdownon Jun 20 2024.

Last update: 2018-07-05
Started: 2018-07-05

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Get alleles	getAlleles getAlleles,IpdDb-method
Get closest full-length sequence	getClosestComplete getClosestComplete,IpdDb-method
Get loci	getLoci getLoci,IpdDb-method
Get reference sequences	getReference getReference,IpdDb-method
Get gene structures	getStructure getStructure,IpdDb-method
The database class for storing allele data from IPD.	.IpdDb columns columns,IpdDb-method IpdDb IpdDb-class keys keys,IpdDb-method keytypes keytypes,IpdDb-method select select,IpdDb-method
Get allele information from IPD	ipdDbPackage-package ipdDbPackage
Load the IPD IMGT/HLA database	loadHlaData
Load the IPD KIR database	loadKirData