{
  "_id": "6a1bdb911d7bb097a0a171e9",
  "Package": "ipdDb",
  "Title": "IPD IMGT/HLA and IPD KIR database for Homo sapiens",
  "Description": "All alleles from the IPD IMGT/HLA\n<https://www.ebi.ac.uk/ipd/imgt/hla/> and IPD KIR\n<https://www.ebi.ac.uk/ipd/kir/> database for Homo sapiens.\nReference: Robinson J, Maccari G, Marsh SGE, Walter L, Blokhuis\nJ, Bimber B, Parham P, De Groot NG, Bontrop RE, Guethlein LA,\nand Hammond JA KIR Nomenclature in non-human species\nImmunogenetics (2018), in preparation.",
  "Version": "1.31.0",
  "Author": "Steffen Klasberg",
  "Maintainer": "Steffen Klasberg <klasberg@dkms-lab.de>",
  "License": "Artistic-2.0",
  "URL": "https://github.com/DKMS-LSL/ipdDb",
  "BugReports": "https://github.com/DKMS-LSL/ipdDb/issues/new",
  "organism": "Homo sapiens",
  "species": "Homo sapiens",
  "biocViews": "GenomicVariation, SequenceMatching, VariantAnnotation,\nDataRepresentation,AnnotationHubSoftware",
  "RoxygenNote": "6.1.0",
  "Encoding": "UTF-8",
  "VignetteBuilder": "knitr",
  "Config/pak/sysreqs": "libicu-dev libpng-dev libssl-dev zlib1g-dev",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:48:16 UTC",
  "RemoteUrl": "https://github.com/bioc/ipdDb",
  "RemoteRef": "HEAD",
  "RemoteSha": "e0f07b9fe9e69862f25510b3ec395ef4bca1ea21",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-31 06:18:36 UTC",
    "User": "root"
  },
  "MD5sum": "d99a3a5036999a9597ad1ccf8729945c",
  "_user": "bioc",
  "_type": "src",
  "_file": "ipdDb_1.31.0.tar.gz",
  "_fileid": "69a66717753b6e1baa5f1c5c8a9ce7c539fa23a43cf8517e6cce0ed4bce1ca61",
  "_filesize": 116277,
  "_sha256": "69a66717753b6e1baa5f1c5c8a9ce7c539fa23a43cf8517e6cce0ed4bce1ca61",
  "_created": "2026-05-31T06:18:36.000Z",
  "_published": "2026-05-31T06:56:17.524Z",
  "_jobs": [
    {
      "job": 78705032796,
      "time": 161,
      "config": "bioc-checks",
      "r": "4.6.0",
      "check": "ERROR",
      "artifact": "7314379946"
    },
    {
      "job": 78705032818,
      "time": 341,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7314398703"
    },
    {
      "job": 78705032807,
      "time": 279,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7314391821"
    },
    {
      "job": 78705032804,
      "time": 210,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7314592462"
    },
    {
      "job": 78705032799,
      "time": 202,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7314596239"
    },
    {
      "job": 78704833088,
      "time": 217,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7314363541"
    },
    {
      "job": 78705032795,
      "time": 136,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7314377333"
    },
    {
      "job": 78705032813,
      "time": 179,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7314381677"
    },
    {
      "job": 78705032810,
      "time": 182,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7314382065"
    },
    {
      "job": 78705032811,
      "time": 167,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7314380646"
    }
  ],
  "_bioccheck": {
    "error": 1,
    "warning": 1,
    "note": 5
  },
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/26705132024",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/bioc/ipdDb",
  "_commit": {
    "id": "e0f07b9fe9e69862f25510b3ec395ef4bca1ea21",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n",
    "time": 1777380496
  },
  "_maintainer": {
    "name": "Steffen Klasberg",
    "email": "klasberg@dkms-lab.de"
  },
  "_distro": "noble",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.5.0",
      "role": "Depends"
    },
    {
      "package": "methods",
      "role": "Depends"
    },
    {
      "package": "AnnotationDbi",
      "version": ">= 1.43.1",
      "role": "Depends"
    },
    {
      "package": "AnnotationHub",
      "role": "Depends"
    },
    {
      "package": "Biostrings",
      "role": "Imports"
    },
    {
      "package": "GenomicRanges",
      "role": "Imports"
    },
    {
      "package": "RSQLite",
      "role": "Imports"
    },
    {
      "package": "DBI",
      "role": "Imports"
    },
    {
      "package": "IRanges",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "assertthat",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 2
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.31.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.30.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "genomicvariation",
    "sequencematching",
    "variantannotation",
    "datarepresentation",
    "annotationhubsoftware"
  ],
  "_stars": 0,
  "_contributors": [
    {
      "user": "sklas",
      "count": 10,
      "uuid": 3309194
    }
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
    "count": 338,
    "source": "https://www.bioconductor.org/packages/stats/bioc/ipdDb"
  },
  "_devurl": "https://github.com/dkms-lsl/ipddb",
  "_searchresults": 8,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/ipdDb.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/dkms-lsl/ipddb",
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "columns",
    "getAlleles",
    "getClosestComplete",
    "getLoci",
    "getReference",
    "getStructure",
    "keys",
    "keytypes",
    "loadHlaData",
    "loadKirData",
    "select"
  ],
  "_help": [
    {
      "page": "getAlleles-IpdDb-method",
      "title": "Get alleles",
      "topics": [
        "getAlleles",
        "getAlleles,IpdDb-method"
      ]
    },
    {
      "page": "getClosestComplete-IpdDb-method",
      "title": "Get closest full-length sequence",
      "topics": [
        "getClosestComplete",
        "getClosestComplete,IpdDb-method"
      ]
    },
    {
      "page": "getLoci-IpdDb-method",
      "title": "Get loci",
      "topics": [
        "getLoci",
        "getLoci,IpdDb-method"
      ]
    },
    {
      "page": "getReference-IpdDb-method",
      "title": "Get reference sequences",
      "topics": [
        "getReference",
        "getReference,IpdDb-method"
      ]
    },
    {
      "page": "getStructure-IpdDb-method",
      "title": "Get gene structures",
      "topics": [
        "getStructure",
        "getStructure,IpdDb-method"
      ]
    },
    {
      "page": "IpdDb",
      "title": "The database class for storing allele data from IPD.",
      "topics": [
        ".IpdDb",
        "columns",
        "columns,IpdDb-method",
        "IpdDb",
        "IpdDb-class",
        "keys",
        "keys,IpdDb-method",
        "keytypes",
        "keytypes,IpdDb-method",
        "select",
        "select,IpdDb-method"
      ]
    },
    {
      "page": "ipdDbPackage",
      "title": "Get allele information from IPD",
      "topics": [
        "ipdDbPackage-package",
        "ipdDbPackage"
      ]
    },
    {
      "page": "loadHlaData",
      "title": "Load the IPD IMGT/HLA database",
      "topics": [
        "loadHlaData"
      ]
    },
    {
      "page": "loadKirData",
      "title": "Load the IPD KIR database",
      "topics": [
        "loadKirData"
      ]
    }
  ],
  "_rundeps": [
    "AnnotationDbi",
    "AnnotationHub",
    "askpass",
    "assertthat",
    "Biobase",
    "BiocBaseUtils",
    "BiocFileCache",
    "BiocGenerics",
    "BiocManager",
    "BiocVersion",
    "Biostrings",
    "bit",
    "bit64",
    "blob",
    "cachem",
    "cli",
    "cpp11",
    "crayon",
    "curl",
    "DBI",
    "dbplyr",
    "dplyr",
    "fastmap",
    "filelock",
    "generics",
    "GenomicRanges",
    "glue",
    "httr",
    "httr2",
    "IRanges",
    "jsonlite",
    "KEGGREST",
    "lifecycle",
    "magrittr",
    "memoise",
    "mime",
    "openssl",
    "pillar",
    "pkgconfig",
    "png",
    "purrr",
    "R6",
    "rappdirs",
    "rlang",
    "RSQLite",
    "S4Vectors",
    "Seqinfo",
    "stringi",
    "stringr",
    "sys",
    "tibble",
    "tidyr",
    "tidyselect",
    "utf8",
    "vctrs",
    "withr",
    "XVector",
    "yaml"
  ],
  "_vignettes": [
    {
      "source": "Readme.Rmd",
      "filename": "Readme.html",
      "title": "ipdDb",
      "author": "Steffen Klasberg",
      "engine": "knitr::rmarkdown",
      "headings": [],
      "created": "2018-07-05 13:29:13",
      "modified": "2018-07-05 13:29:13",
      "commits": 1
    }
  ],
  "_score": 3.3010299956639813,
  "_indexed": true,
  "_nocasepkg": "ipddb",
  "_universes": [
    "bioc",
    "dkms-lsl"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.31.0",
      "date": "2026-05-31T06:22:44.000Z",
      "distro": "noble",
      "commit": "e0f07b9fe9e69862f25510b3ec395ef4bca1ea21",
      "fileid": "ffdf54815ec90d81c4bf8730f031d1abbea1b25874976101d41b5805640ae563",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26705132024"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.31.0",
      "date": "2026-05-31T06:21:52.000Z",
      "distro": "noble",
      "commit": "e0f07b9fe9e69862f25510b3ec395ef4bca1ea21",
      "fileid": "132fd1fcc9a7192b3a6c11f0431f5e5fb47c0962ca2ba549255502281a30d008",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26705132024"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.31.0",
      "date": "2026-05-31T06:53:32.000Z",
      "commit": "e0f07b9fe9e69862f25510b3ec395ef4bca1ea21",
      "fileid": "e0f2f51c8e26acf61aa908bec3089c3b430d54606825beda932e2b1d19757c53",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26705132024"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.31.0",
      "date": "2026-05-31T06:54:10.000Z",
      "commit": "e0f07b9fe9e69862f25510b3ec395ef4bca1ea21",
      "fileid": "2ee34e361b3dd938c3e76c3d2dbd6ada335ab9b0d2df69ff10c2016fdf285e26",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26705132024"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.31.0",
      "date": "2026-05-31T06:21:16.000Z",
      "commit": "e0f07b9fe9e69862f25510b3ec395ef4bca1ea21",
      "fileid": "835d073e1b2dae21eac59eba3b5fb18b8e15943eb44ea81228abe5e682d35118",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26705132024"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.31.0",
      "date": "2026-05-31T06:20:00.000Z",
      "commit": "e0f07b9fe9e69862f25510b3ec395ef4bca1ea21",
      "fileid": "f88057e8d76d1fcce7192800de5b6ef0cf23440a04b42279aa9774d4c832f2f1",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26705132024"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.31.0",
      "date": "2026-05-31T06:20:00.000Z",
      "commit": "e0f07b9fe9e69862f25510b3ec395ef4bca1ea21",
      "fileid": "1a1f8780e899d6bcd18690f5fed4e6f64a8553232ac5785bade95ce91bd88aab",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26705132024"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.31.0",
      "date": "2026-05-31T06:20:02.000Z",
      "commit": "e0f07b9fe9e69862f25510b3ec395ef4bca1ea21",
      "fileid": "bca92e5318db8009c2a08442fe3ba4285d7c78cd4b42e2b5d38a3c718e821423",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26705132024"
    }
  ]
}