Package: iSEEhub 1.15.0

Kevin Rue-Albrecht

iSEEhub: iSEE for the Bioconductor ExperimentHub

This package defines a custom landing page for an iSEE app interfacing with the Bioconductor ExperimentHub. The landing page allows users to browse the ExperimentHub, select a data set, download and cache it, and import it directly into a Bioconductor iSEE app.

Authors:Kevin Rue-Albrecht [aut, cre]

iSEEhub_1.15.0.tar.gz
iSEEhub_1.15.0.zip(r-4.7)iSEEhub_1.15.0.zip(r-4.6)iSEEhub_1.15.0.zip(r-4.5)
iSEEhub_1.15.0.tgz(r-4.6-any)iSEEhub_1.15.0.tgz(r-4.5-any)
iSEEhub_1.15.0.tar.gz(r-4.7-any)iSEEhub_1.15.0.tar.gz(r-4.6-any)
iSEEhub_1.15.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
iSEEhub/json (API)

# Install 'iSEEhub' in R:
install.packages('iSEEhub', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/isee/iseehub/issues

On BioConductor:iSEEhub-1.15.0(bioc 3.24)iSEEhub-1.14.0(bioc 3.23)

dataimportimmunooncology infrastructureshinyappssinglecellsoftwarebioconductorbioconductor-packagehacktoberfestisee

5.26 score 3 stars 4 scripts 1 exports 131 dependencies

Last updated from:f8d4039ee8. Checks:3 ERROR, 5 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksERROR1240
linux-devel-x86_64NOTE1382
source / vignettesOK356
linux-release-x86_64NOTE1385
macos-release-arm64NOTE638
macos-oldrel-arm64ERROR756
windows-develNOTE2935
windows-releaseNOTE3428
windows-oldrelERROR3152
wasm-releaseOK1183

Exports:iSEEhub

Dependencies:abindAnnotationDbiAnnotationHubaskpassbase64encBiobaseBiocBaseUtilsBiocFileCacheBiocGenericsBiocManagerBiocVersionBiostringsbitbit64blobbslibcachemcirclizecliclueclustercodetoolscolorspacecolourpickercommonmarkComplexHeatmapcpp11crayoncrosstalkcurlDBIdbplyrDelayedArraydigestdoParalleldplyrDTevaluateExperimentHubfarverfastmapfilelockfontawesomeforeachfsgenericsGenomicRangesGetoptLongggplot2ggrepelGlobalOptionsgluegtablehighrhtmltoolshtmlwidgetshttpuvhttrhttr2igraphIRangesiSEEisobanditeratorsjquerylibjsonliteKEGGRESTknitrlabelinglaterlatticelazyevallifecyclelistviewermagrittrMatrixMatrixGenericsmatrixStatsmemoisemgcvmimeminiUInlmeopensslotelpillarpkgconfigpngpromisespurrrR6rappdirsRColorBrewerRcpprintrojsrjsonrlangrmarkdownRSQLiteS4ArraysS4VectorsS7sassscalesSeqinfoshapeshinyshinyAceshinydashboardshinyjsshinyWidgetsSingleCellExperimentsourcetoolsSparseArraystringistringrSummarizedExperimentsystibbletidyrtidyselecttinytexutf8vctrsviporviridisLitewithrxfunxtableXVectoryaml

Introduction to iSEEhub
Introduction | Basics | Install iSEEhub | Required knowledge | Asking for help | Citing iSEEhub | Quick start to using to iSEEhub | The ExperimentHub pane | The Selected Dataset pane | Overview | The Info tab | The Config tab | The main iSEE app | Managing dataset dependencies | From the R console | From the live app | Reproducibility | Bibliography
Rendered fromiSEEhub.Rmdusingknitr::rmarkdown

Last update: 2022-09-13
Started: 2022-08-13

Contributing to iSEEhub
Initial app configurations | Overview | Requirements | Example | Process for contributing | Reproducibility | Bibliography
Rendered fromcontributing.Rmdusingknitr::rmarkdown

Last update: 2022-08-15
Started: 2022-08-15