{
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  "Package": "iSEEhub",
  "Title": "iSEE for the Bioconductor ExperimentHub",
  "Version": "1.15.0",
  "Date": "2024-10-01",
  "Authors@R": "c(person(\"Kevin\", \"Rue-Albrecht\", , \"kevinrue67@gmail.com\",\nrole = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0003-3899-3872\")))",
  "Description": "This package defines a custom landing page for an iSEE app\ninterfacing with the Bioconductor ExperimentHub. The landing\npage allows users to browse the ExperimentHub, select a data\nset, download and cache it, and import it directly into a\nBioconductor iSEE app.",
  "License": "Artistic-2.0",
  "URL": "https://github.com/iSEE/iSEEhub",
  "BugReports": "https://support.bioconductor.org/t/iSEEhub",
  "biocViews": "DataImport, ImmunoOncology Infrastructure, ShinyApps,\nSingleCell, Software",
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  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:59:00 UTC",
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    "User": "root"
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  "Author": "Kevin Rue-Albrecht [aut, cre] (ORCID:\n<https://orcid.org/0000-0003-3899-3872>)",
  "Maintainer": "Kevin Rue-Albrecht <kevinrue67@gmail.com>",
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  "_published": "2026-07-04T17:45:17.997Z",
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    "warning": 1,
    "note": 4
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  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/28709456546",
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      "fileid": "https://r2.ropensci.org/c39d4c715f913423dfabd6e47c9428e9ce0aad2ec50c1fddbace1b3d23c54b31",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28709456546"
    }
  ]
}