Package: iModMix 1.3.0

Isis Narvaez-Bandera

iModMix: Integrative Modules for Multi-Omics Data

The iModMix network-based method offers an integrated framework for analyzing multi-omics data, including metabolomics, proteomics, and transcriptomics data, enabling the exploration of intricate molecular associations within heterogeneous biological systems.

Authors:Isis Narvaez-Bandera [aut, cre]

iModMix_1.3.0.tar.gz
iModMix_1.3.0.zip(r-4.7)iModMix_1.3.0.zip(r-4.6)iModMix_1.3.0.zip(r-4.5)
iModMix_1.3.0.tgz(r-4.6-any)iModMix_1.3.0.tgz(r-4.5-any)
iModMix_1.3.0.tar.gz(r-4.7-any)iModMix_1.3.0.tar.gz(r-4.6-any)
iModMix_1.3.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
iModMix/json (API)
NEWS

# Install 'iModMix' in R:

install.packages('iModMix', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/biodatalab/imodmix/issues

On BioConductor:iModMix-1.3.0(bioc 3.24)iModMix-1.2.0(bioc 3.23)

software network clustering visualization transcriptomics proteomics metabolomics geneexpression principalcomponent bioinformatics multiomics

5.60 score 4 stars 3 scripts 218 downloads 11 exports 144 dependencies

Last updated from:646836cc4b. Checks:1 NOTE, 9 OK. Indexed: yes.

Target	Result	Time
bioc-checks	NOTE	590
linux-devel-x86_64	OK	870
source / vignettes	OK	286
linux-release-x86_64	OK	599
macos-release-arm64	OK	111
macos-oldrel-arm64	OK	117
windows-devel	OK	117
windows-release	OK	122
windows-oldrel	OK	124
wasm-release	OK	174

Exports:fctAssignmentGenesEnrichr fctClusterAssignments fctEigengenes fctFeaturesAnnotCorrelation fctHierarchicalCluster fctiModMix2SE fctLoadData fctModulesCorrelation fctPartialCors fctPerformClassification run_app

Dependencies:abind AnnotationDbi AnnotationHub askpass attempt backports base64enc Biobase BiocBaseUtils BiocFileCache BiocGenerics BiocManager BiocVersion Biostrings bit bit64 blob bslib cachem checkmate circlize cli clue cluster codetools colorspace commonmark ComplexHeatmap config corrplot cowplot cpp11 crayon crosstalk curl data.table DBI dbplyr DelayedArray digest doParallel dplyr DT dynamicTreeCut evaluate ExperimentHub farver fastcluster fastmap filelock fontawesome foreach foreign Formula fs generics GenomicRanges GetoptLong ggplot2 glassoFast GlobalOptions glue golem gridExtra gtable here highr Hmisc htmlTable htmltools htmlwidgets httpuv httr httr2 iModMixData impute IRanges isoband iterators jquerylib jsonlite KEGGREST knitr labeling later lattice lazyeval lifecycle magrittr Matrix MatrixGenerics matrixStats memoise mime nnet openssl otel pillar pkgconfig png preprocessCore promises purrr R6 rappdirs RColorBrewer Rcpp rjson rlang rmarkdown rpart rprojroot RSQLite rstudioapi S4Arrays S4Vectors S7 sass scales Seqinfo shape shiny shinyBS sourcetools SparseArray stringi stringr SummarizedExperiment survival sys tibble tidyr tidyselect tinytex utf8 vctrs viridisLite visNetwork WGCNA withr xfun xtable XVector yaml

iModMix -integrative Modules for Multi-omics data

Isis Narvaez-Bandera

Rendered fromiModMixTutorial.Rmdusingknitr::rmarkdownon Jun 06 2026.

Last update: 2025-10-10
Started: 2025-05-12

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
fctAssignmentGenesEnrichr	fctAssignmentGenesEnrichr
fctClusterAssignments	fctClusterAssignments
fctEigengenes	fctEigengenes
fctFeaturesAnnotCorrelation	fctFeaturesAnnotCorrelation
fctHierarchicalCluster	fctHierarchicalCluster
fctiModMix2SE	fctiModMix2SE
fctLoadData	fctLoadData
fctModulesCorrelation	fctModulesCorrelation
fctPartialCors	fctPartialCors
fctPerformClassification	fctPerformClassification
Run the Shiny Application	run_app