Package: hicVennDiagram 1.11.0

Jianhong Ou

hicVennDiagram: Venn Diagram for genomic interaction data

A package to generate high-resolution Venn and Upset plots for genomic interaction data from HiC, ChIA-PET, HiChIP, PLAC-Seq, Hi-TrAC, HiCAR and etc. The package generates plots specifically crafted to eliminate the deceptive visual representation caused by the counts method.

Authors:Jianhong Ou [aut, cre]

hicVennDiagram_1.11.0.tar.gz
hicVennDiagram_1.11.0.zip(r-4.7)hicVennDiagram_1.11.0.zip(r-4.6)hicVennDiagram_1.11.0.zip(r-4.5)
hicVennDiagram_1.11.0.tgz(r-4.6-any)hicVennDiagram_1.11.0.tgz(r-4.5-any)
hicVennDiagram_1.11.0.tar.gz(r-4.7-any)hicVennDiagram_1.11.0.tar.gz(r-4.6-any)
hicVennDiagram_1.11.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
hicVennDiagram/json (API)
NEWS

# Install 'hicVennDiagram' in R:

install.packages('hicVennDiagram', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/jianhong/hicvenndiagram/issues

On BioConductor:hicVennDiagram-1.11.0(bioc 3.24)hicVennDiagram-1.10.0(bioc 3.23)

dna3dstructure hic visualization

4.86 score 18 scripts 292 downloads 10 exports 101 dependencies

Last updated from:23e656c733. Checks:1 NOTE, 9 OK. Indexed: yes.

Target	Result	Time
bioc-checks	NOTE	251
linux-devel-x86_64	OK	463
source / vignettes	OK	410
linux-release-x86_64	OK	474
macos-release-arm64	OK	228
macos-oldrel-arm64	OK	319
windows-devel	OK	592
windows-release	OK	347
windows-oldrel	OK	408
wasm-release	OK	202

Exports:browseVenn browseVennOutput createGIbackground gleamTest renderbrowseVenn show upsetPlot vennCount vennPlot vennTable

Dependencies:abind askpass base64enc BH Biobase BiocBaseUtils BiocGenerics BiocIO BiocParallel Biostrings bitops bslib cachem cigarillo cli codetools colorspace ComplexUpset cpp11 crayon curl DelayedArray digest eulerr evaluate farver fastmap fontawesome formatR fs futile.logger futile.options generics GenomicAlignments GenomicRanges GenSA ggplot2 glue gtable highr htmltools htmlwidgets httr InteractionSet IRanges isoband jquerylib jsonlite knitr labeling lambda.r lattice lifecycle magrittr Matrix MatrixGenerics matrixStats memoise mime openssl patchwork plyr polyclip polylabelr R6 rappdirs RColorBrewer Rcpp RcppArmadillo RCurl reshape2 restfulr Rhtslib rjson rlang rmarkdown Rsamtools rtracklayer S4Arrays S4Vectors S7 sass scales Seqinfo snow SparseArray stringi stringr SummarizedExperiment svglite sys systemfonts textshaping tinytex vctrs viridisLite withr xfun XML XVector yaml

hicVennDiagram Vignette: overview

Jianhong Ou

Rendered fromhicVennDiagram.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2025-09-22
Started: 2023-07-05

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Browse the venn plot	browseVenn
Shiny bindings for browseVenn	browseVenn-shiny browseVennOutput renderbrowseVenn
Create background by input GInteractions	createGIbackground
Perform GLEAM test	gleamTest
UpSet plot for the Venn count table	upsetPlot
Construct intersections of sets	vennCount
Venn diagram for the Venn count table	vennPlot
Class '"vennTable"'	$,vennTable-method $<-,vennTable-method show,vennTable-method vennTable vennTable-class [[,vennTable,ANY,ANY-method [[<-,vennTable,ANY,ANY-method `[[<-`,vennTable-method `[[`,vennTable-method