Package: hicVennDiagram 1.11.0

Jianhong Ou

hicVennDiagram: Venn Diagram for genomic interaction data

A package to generate high-resolution Venn and Upset plots for genomic interaction data from HiC, ChIA-PET, HiChIP, PLAC-Seq, Hi-TrAC, HiCAR and etc. The package generates plots specifically crafted to eliminate the deceptive visual representation caused by the counts method.

Authors:Jianhong Ou [aut, cre]

hicVennDiagram_1.11.0.tar.gz
hicVennDiagram_1.11.0.zip(r-4.7)hicVennDiagram_1.11.0.zip(r-4.6)hicVennDiagram_1.11.0.zip(r-4.5)
hicVennDiagram_1.11.0.tgz(r-4.6-any)hicVennDiagram_1.11.0.tgz(r-4.5-any)
hicVennDiagram_1.11.0.tar.gz(r-4.7-any)hicVennDiagram_1.11.0.tar.gz(r-4.6-any)
hicVennDiagram_1.11.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
hicVennDiagram/json (API)

# Install 'hicVennDiagram' in R:

install.packages('hicVennDiagram', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/jianhong/hicvenndiagram/issues

On BioConductor:hicVennDiagram-1.11.0(bioc 3.24)hicVennDiagram-1.10.0(bioc 3.23)

dna3dstructure hic visualization

4.72 score 13 scripts 10 exports 97 dependencies

Last updated from:23e656c733. Checks:1 NOTE, 9 OK. Indexed: yes.

Target	Result	Time
bioc-checks	NOTE	257
linux-devel-x86_64	OK	457
source / vignettes	OK	423
linux-release-x86_64	OK	463
macos-release-arm64	OK	224
macos-oldrel-arm64	OK	209
windows-devel	OK	381
windows-release	OK	363
windows-oldrel	OK	359
wasm-release	OK	248

Exports:browseVenn browseVennOutput createGIbackground gleamTest renderbrowseVenn show upsetPlot vennCount vennPlot vennTable

Dependencies:abind askpass base64enc BH Biobase BiocBaseUtils BiocGenerics BiocIO BiocParallel Biostrings bitops bslib cachem cigarillo cli codetools colorspace ComplexUpset cpp11 crayon curl DelayedArray digest eulerr evaluate farver fastmap fontawesome formatR fs futile.logger futile.options generics GenomicAlignments GenomicRanges ggplot2 glue gtable highr htmltools htmlwidgets httr InteractionSet IRanges isoband jquerylib jsonlite knitr labeling lambda.r lattice lifecycle magrittr Matrix MatrixGenerics matrixStats memoise mime openssl patchwork plyr R6 rappdirs RColorBrewer Rcpp RCurl reshape2 restfulr Rhtslib rjson rlang rmarkdown Rsamtools rtracklayer S4Arrays S4Vectors S7 sass scales Seqinfo snow SparseArray stringi stringr SummarizedExperiment svglite sys systemfonts textshaping tinytex vctrs viridisLite withr xfun XML XVector yaml

hicVennDiagram Vignette: overview

Rendered fromhicVennDiagram.Rmdusingknitr::rmarkdown

Last update: 2025-09-22
Started: 2023-07-05

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Browse the venn plot	browseVenn
Shiny bindings for browseVenn	browseVenn-shiny browseVennOutput renderbrowseVenn
Create background by input GInteractions	createGIbackground
Perform GLEAM test	gleamTest
UpSet plot for the Venn count table	upsetPlot
Construct intersections of sets	vennCount
Venn diagram for the Venn count table	vennPlot
Class '"vennTable"'	$,vennTable-method $<-,vennTable-method show,vennTable-method vennTable vennTable-class [[,vennTable,ANY,ANY-method [[<-,vennTable,ANY,ANY-method `[[<-`,vennTable-method `[[`,vennTable-method