{ "_id": "6a4995e974ff1be5edd78c18", "Package": "hicVennDiagram", "Title": "Venn Diagram for genomic interaction data", "Version": "1.11.0", "Authors@R": "person(given=\"Jianhong\", family=\"Ou\", email=\"jou@morgridge.org\",\nrole=c(\"aut\", \"cre\"), comment=c(ORCID=\"0000-0002-8652-2488\"))", "Description": "A package to generate high-resolution Venn and Upset plots\nfor genomic interaction data from HiC, ChIA-PET, HiChIP,\nPLAC-Seq, Hi-TrAC, HiCAR and etc. The package generates plots\nspecifically crafted to eliminate the deceptive visual\nrepresentation caused by the counts method.", "License": "GPL-3", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.2", "VignetteBuilder": "knitr", "biocViews": "DNA3DStructure, HiC, Visualization", "URL": "https://github.com/jianhong/hicVennDiagram", "BugReports": "https://github.com/jianhong/hicVennDiagram/issues", "Config/pak/sysreqs": "cmake libfontconfig1-dev libfreetype6-dev\nlibfribidi-dev make libharfbuzz-dev libbz2-dev libicu-dev\nliblzma-dev libpng-dev libuv1-dev libxml2-dev libssl-dev\nxz-utils zlib1g-dev libclang-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 13:01:14 UTC", "RemoteUrl": "https://github.com/bioc/hicVennDiagram", "RemoteRef": "HEAD", "RemoteSha": "23e656c7332e430f251de2e83316a8f696dcaccd", "NeedsCompilation": "no", "Packaged": { "Date": "2026-07-04 23:13:38 UTC", "User": "root" }, "Author": "Jianhong Ou [aut, cre] (ORCID: )", "Maintainer": "Jianhong Ou ", "_user": "bioc", "_type": "src", "_file": "hicVennDiagram_1.11.0.tar.gz", "_fileid": "https://r2.ropensci.org/66b93ebc174ebaea47727d45ab252482a82805af6de3dea34e626a3545992e37", "_filesize": 831877, "_sha256": "66b93ebc174ebaea47727d45ab252482a82805af6de3dea34e626a3545992e37", "_expires": "2026-10-12T23:23:20.000Z", "_created": "2026-07-04T23:13:38.000Z", "_published": "2026-07-04T23:23:21.787Z", "_bioccheck": { "error": 0, "warning": 0, "note": 5 }, "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/bioc/actions/runs/28722583275", "_status": "success", "_upstream": "https://github.com/bioc/hicVennDiagram", "_commit": { "id": "23e656c7332e430f251de2e83316a8f696dcaccd", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777381274 }, "_maintainer": { "name": "Jianhong Ou", "email": "jou@morgridge.org", "orcid": "0000-0002-8652-2488" }, "_distro": "resolute", "_jobs": [ { "job": 85174865448, "time": 257, "config": "bioc-checks", "r": "4.6.1", "check": "NOTE", "artifact": "8086313839" }, { "job": 85174865450, "time": 457, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "8086335084" }, { "job": 85174865452, "time": 463, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "8086335704" }, { "job": 85174865456, "time": 209, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "8086339468" }, { "job": 85174865463, "time": 224, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "8086340792" }, { "job": 85174475472, "time": 423, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "8086287584" }, { "job": 85174865442, "time": 248, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "8086312838" }, { "job": 85174865464, "time": 381, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "8086326705" }, { "job": 85174865489, "time": 359, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "8086324441" }, { "job": 85174865461, "time": 363, "config": "windows-release", "r": "4.6.1", "check": "OK", "artifact": "8086324916" } ], "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.3.0", "role": "Depends" }, { "package": "Seqinfo", "role": "Imports" }, { "package": "GenomicRanges", "role": "Imports" }, { "package": "IRanges", "role": "Imports" }, { "package": "InteractionSet", "role": "Imports" }, { "package": "rtracklayer", "role": "Imports" }, { "package": "ggplot2", "role": "Imports" }, { "package": "ComplexUpset", "role": "Imports" }, { "package": "reshape2", "role": "Imports" }, { "package": "eulerr", "role": "Imports" }, { "package": "S4Vectors", "role": "Imports" }, { "package": "methods", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "htmlwidgets", "role": "Imports" }, { "package": "svglite", "role": "Imports" }, { "package": "BiocStyle", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "testthat", "role": "Suggests" }, { "package": "ChIPpeakAnno", "role": "Suggests" }, { "package": "grid", "role": "Suggests" }, { "package": "TxDb.Hsapiens.UCSC.hg38.knownGene", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-30", "n": 1 }, { "week": "2025-39", "n": 1 }, { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.11.0", "bioc": "3.24" }, { "branch": "release", "version": "1.10.0", "bioc": "3.23" } ], "_topics": [ "dna3dstructure", "hic", "visualization" ], "_stars": 0, "_contributors": [ { "user": "jianhong", "count": 17, "uuid": 5640707 }, { "user": "jwokaty", "count": 12, "uuid": 1744257 }, { "user": "hpages", "count": 1, "uuid": 8810451 } ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 445, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_devurl": "https://github.com/jianhong/hicvenndiagram", "_searchresults": 13, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/hicVennDiagram.html", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/jianhong/hicvenndiagram", "_realowner": "bioc", "_cranurl": false, "_exports": [ "browseVenn", "browseVennOutput", "createGIbackground", "gleamTest", "renderbrowseVenn", "show", "upsetPlot", "vennCount", "vennPlot", "vennTable" ], "_help": [ { "page": "browseVenn", "title": "Browse the venn plot", "topics": [ "browseVenn" ] }, { "page": "browseVenn-shiny", "title": "Shiny bindings for browseVenn", "topics": [ "browseVenn-shiny", "browseVennOutput", "renderbrowseVenn" ] }, { "page": "createGIbackground", "title": "Create background by input GInteractions", "topics": [ "createGIbackground" ] }, { "page": "gleamTest", "title": "Perform GLEAM test", "topics": [ "gleamTest" ] }, { "page": "upsetPlot", "title": "UpSet plot for the Venn count table", "topics": [ "upsetPlot" ] }, { "page": "vennCount", "title": "Construct intersections of sets", "topics": [ "vennCount" ] }, { "page": "vennPlot", "title": "Venn diagram for the Venn count table", "topics": [ "vennPlot" ] }, { "page": "vennTable-class", "title": "Class '\"vennTable\"'", "topics": [ "$,vennTable-method", "$<-,vennTable-method", "show,vennTable-method", "vennTable", "vennTable-class", "[[,vennTable,ANY,ANY-method", "[[<-,vennTable,ANY,ANY-method", "`[[<-`,vennTable-method", "`[[`,vennTable-method" ] } ], "_readme": "https://github.com/bioc/hicVennDiagram/raw/HEAD/README.md", "_rundeps": [ "abind", "askpass", "base64enc", "BH", "Biobase", "BiocBaseUtils", "BiocGenerics", "BiocIO", "BiocParallel", "Biostrings", "bitops", "bslib", "cachem", "cigarillo", "cli", "codetools", "colorspace", "ComplexUpset", "cpp11", "crayon", "curl", "DelayedArray", "digest", "eulerr", "evaluate", "farver", "fastmap", "fontawesome", "formatR", "fs", "futile.logger", "futile.options", "generics", "GenomicAlignments", "GenomicRanges", "ggplot2", "glue", "gtable", "highr", "htmltools", "htmlwidgets", "httr", "InteractionSet", "IRanges", "isoband", "jquerylib", "jsonlite", "knitr", "labeling", "lambda.r", "lattice", "lifecycle", "magrittr", "Matrix", "MatrixGenerics", "matrixStats", "memoise", "mime", "openssl", "patchwork", "plyr", "R6", "rappdirs", "RColorBrewer", "Rcpp", "RCurl", "reshape2", "restfulr", "Rhtslib", "rjson", "rlang", "rmarkdown", "Rsamtools", "rtracklayer", "S4Arrays", "S4Vectors", "S7", "sass", "scales", "Seqinfo", "snow", "SparseArray", "stringi", "stringr", "SummarizedExperiment", "svglite", "sys", "systemfonts", "textshaping", "tinytex", "vctrs", "viridisLite", "withr", "xfun", "XML", "XVector", "yaml" ], "_vignettes": [ { "source": "hicVennDiagram.Rmd", "filename": "hicVennDiagram.html", "title": "hicVennDiagram Vignette: overview", "author": "Jianhong Ou", "engine": "knitr::rmarkdown", "headings": [ "Introduction", "Quick start", "Installation", "Load library", "Details about vennCount", "Plot for overlapping peaks output by ChIPpeakAnno", "GLEAM test", "Session Info" ], "created": "2023-07-05 16:26:58", "modified": "2025-09-22 17:36:58", "commits": 9 } ], "_score": 4.7160033436347994, "_indexed": true, "_nocasepkg": "hicvenndiagram", "_universes": [ "bioc", "jianhong" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.11.0", "date": "2026-07-04T23:18:21.000Z", "distro": "resolute", "commit": "23e656c7332e430f251de2e83316a8f696dcaccd", "fileid": "https://r2.ropensci.org/7180d9723b22e18828db7e6c334ee3a43243ac3779cc38f4e136727931a59555", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/28722583275" }, { "r": "4.6.1", "os": "linux", "version": "1.11.0", "date": "2026-07-04T23:18:43.000Z", "distro": "resolute", "commit": "23e656c7332e430f251de2e83316a8f696dcaccd", "fileid": "https://r2.ropensci.org/13af60bedced4f1cd6804d8fc855374d015b44eb9a2c3fd9888428c3a2e8d94f", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/28722583275" }, { "r": "4.5.3", "os": "mac", "version": "1.11.0", "date": "2026-07-04T23:20:45.000Z", "commit": "23e656c7332e430f251de2e83316a8f696dcaccd", "fileid": "https://r2.ropensci.org/9a1187a006956dfab4b244ae20d7cc592837d280aad48329c845a5c1512102bc", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/28722583275" }, { "r": "4.6.1", "os": "mac", "version": "1.11.0", "date": "2026-07-04T23:20:58.000Z", "commit": "23e656c7332e430f251de2e83316a8f696dcaccd", "fileid": "https://r2.ropensci.org/b4a7ed8f5be76f29eed44e301481351d8ec267d450702d37a46b5c55b9091a9f", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/28722583275" }, { "r": "4.6.0", "os": "wasm", "version": "1.11.0", "date": "2026-07-04T23:18:27.000Z", "commit": "23e656c7332e430f251de2e83316a8f696dcaccd", "fileid": "https://r2.ropensci.org/e89b1241f938c92d55b56bc3bbddbd9910aa5a058600982ad58a7df5372f4ea6", "status": "success", "buildurl": "https://github.com/r-universe/bioc/actions/runs/28722583275" }, { "r": "4.7.0", "os": "win", "version": "1.11.0", "date": "2026-07-04T23:16:20.000Z", "commit": "23e656c7332e430f251de2e83316a8f696dcaccd", "fileid": "https://r2.ropensci.org/643c10856698fde99468cc6133292b043e3de3096853ca705461844303972871", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/28722583275" }, { "r": "4.5.3", "os": "win", "version": "1.11.0", "date": "2026-07-04T23:16:34.000Z", "commit": "23e656c7332e430f251de2e83316a8f696dcaccd", "fileid": "https://r2.ropensci.org/082ab4712b8acbd97aacd2289c9bc32da0f27ab0e764ea0338f24255c96a4c2b", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/28722583275" }, { "r": "4.6.1", "os": "win", "version": "1.11.0", "date": "2026-07-04T23:16:23.000Z", "commit": "23e656c7332e430f251de2e83316a8f696dcaccd", "fileid": "https://r2.ropensci.org/d8c9c67f91f0567f78bd0a1ad3667dae831da0065225be5dd774b42942fdc213", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/28722583275" } ] }