Package: healthyControlsPresenceChecker 1.17.0

Davide Chicco

healthyControlsPresenceChecker: Dowloads A Gene Expression Dataset From GEO And Checks If It Contains Data Of Healthy Controls Or Not

A function that reads in the GEO accession code of a gene expression dataset, retrieves its data from GEO, and checks if data of healthy controls are present in the dataset. It returns true if healthy controls data are found, and false otherwise. GEO: Gene Expression Omnibus. ID: identifier code. The GEO datasets are downloaded from the URL <https://ftp.ncbi.nlm.nih.gov/geo/series/>.

Authors:Davide Chicco [aut, cre]

healthyControlsPresenceChecker_1.17.0.tar.gz
healthyControlsPresenceChecker_1.17.0.tar.gz(r-4.7-any)healthyControlsPresenceChecker_1.17.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
healthyControlsPresenceChecker/json (API)

# Install 'healthyControlsPresenceChecker' in R:
install.packages('healthyControlsPresenceChecker', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/davidechicco/healthycontrolspresencechecker/issues

On BioConductor:healthyControlsPresenceChecker-1.17.0(data/experiment 3.24)healthyControlsPresenceChecker-1.16.0(data/experiment 3.23)

georepositorydataexpressiondatadatapkg

3.00 score 2 scripts 1 exports 83 dependencies

Last updated from:2b322fdb32. Checks:1 WARNING, 3 ERROR. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksWARNING157
linux-develERROR337
source / vignettesERROR239
linux-releaseERROR294

Exports:healthyControlsCheck

Dependencies:abindannotateAnnotationDbiaskpassBiobaseBiocBaseUtilsBiocFileCacheBiocGenericsBiostringsbitbit64blobcachemclicliprcpp11crayoncurldata.tableDBIdbplyrDelayedArraydplyrfastmapfilelockgeneExpressionFromGEOgenericsGenomicRangesGEOquerygluehmshttrhttr2IRangesjsonliteKEGGRESTlatticelifecyclelimmamagrittrMatrixMatrixGenericsmatrixStatsmemoisemimeopensslpillarpkgconfigpngprettyunitsprogresspurrrR.methodsS3R.ooR.utilsR6readrrentrezrlangRSQLitervestS4ArraysS4VectorsselectrSeqinfoSparseArraystatmodstringistringrSummarizedExperimentsystibbletidyrtidyselecttzdbutf8vctrsvroomwithrXMLxml2xtableXVector