{
  "_id": "6aca1860fe5cc25786e84a04",
  "Encoding": "UTF-8",
  "Package": "healthyControlsPresenceChecker",
  "Title": "Dowloads A Gene Expression Dataset From GEO And Checks If It\nContains Data Of Healthy Controls Or Not",
  "Version": "1.17.0",
  "Authors@R": "person(\"Davide\", \"Chicco\", email = \"davide.chicco@gmail.com\", comment = c(ORCID = \"0000-0001-9655-7142\"),\nrole = c(\"aut\", \"cre\"))",
  "Description": "A function that reads in the GEO accession code of a gene\nexpression dataset, retrieves its data from GEO, and checks if\ndata of healthy controls are present in the dataset. It returns\ntrue if healthy controls data are found, and false otherwise.\nGEO: Gene Expression Omnibus. ID: identifier code. The GEO\ndatasets are downloaded from the URL\n<https://ftp.ncbi.nlm.nih.gov/geo/series/>.",
  "BugReports": "https://github.com/davidechicco/healthyControlsPresenceChecker/issues",
  "License": "GPL-3",
  "URL": "https://github.com/davidechicco/healthyControlsPresenceChecker",
  "biocViews": "GEO, RepositoryData, ExpressionData",
  "VignetteBuilder": "knitr",
  "RoxygenNote": "7.1.1",
  "Config/pak/sysreqs": "libicu-dev libpng-dev libxml2-dev libssl-dev\nlibx11-dev zlib1g-dev",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:36:00 UTC",
  "RemoteUrl": "https://github.com/bioc/healthyControlsPresenceChecker",
  "RemoteRef": "HEAD",
  "RemoteSha": "2b322fdb32ac8c5378b56fbf679256e71e3ebd6d",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-10-10 10:43:33 UTC",
    "User": "root"
  },
  "Author": "Davide Chicco [aut, cre] (ORCID:\n<https://orcid.org/0000-0001-9655-7142>)",
  "Maintainer": "Davide Chicco <davide.chicco@gmail.com>",
  "_user": "bioc",
  "_type": "src",
  "_file": "healthyControlsPresenceChecker_1.17.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/632aa5c78a7e3752863a93446219054c7e2b8b23d82d779527e416aac078b4ac",
  "_filesize": 83414,
  "_sha256": "632aa5c78a7e3752863a93446219054c7e2b8b23d82d779527e416aac078b4ac",
  "_expires": "2027-01-18T10:50:06.000Z",
  "_created": "2026-10-10T10:43:33.000Z",
  "_published": "2026-10-10T10:50:08.396Z",
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/38045676741",
  "_status": "failure",
  "_host": "GitHub-Actions",
  "_bioccheck": {
    "error": 0,
    "warning": 1,
    "note": 8
  },
  "_upstream": "https://github.com/bioc/healthyControlsPresenceChecker",
  "_commit": {
    "id": "2b322fdb32ac8c5378b56fbf679256e71e3ebd6d",
    "author": "lshep <lori.shepherd@roswellpark.org>",
    "committer": "lshep <lori.shepherd@roswellpark.org>",
    "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n",
    "time": 1777379760
  },
  "_maintainer": {
    "name": "Davide Chicco",
    "email": "davide.chicco@gmail.com",
    "login": "davidechicco",
    "description": "Scientific researcher working on machine learning and biomedical informatics \n\ndavidechicco(AT)davidechicco.it",
    "uuid": 12862995,
    "orcid": "0000-0001-9655-7142"
  },
  "_distro": "resolute",
  "_jobs": [
    {
      "job": 114195352554,
      "time": 157,
      "config": "bioc-checks",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "11666544253"
    },
    {
      "job": 114195352653,
      "time": 337,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "ERROR",
      "artifact": "11666758932"
    },
    {
      "job": 114195352573,
      "time": 294,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "ERROR",
      "artifact": "11667609376"
    },
    {
      "job": 114194657830,
      "time": 239,
      "config": "source",
      "r": "4.6.1",
      "check": "ERROR",
      "artifact": "11667414183"
    }
  ],
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.0.0",
      "role": "Depends"
    },
    {
      "package": "xml2",
      "role": "Imports"
    },
    {
      "package": "GEOquery",
      "role": "Imports"
    },
    {
      "package": "geneExpressionFromGEO",
      "role": "Imports"
    },
    {
      "package": "magrittr",
      "role": "Imports"
    },
    {
      "package": "RUnit",
      "role": "Suggests"
    },
    {
      "package": "BiocGenerics",
      "role": "Suggests"
    },
    {
      "package": "markdown",
      "role": "Suggests"
    },
    {
      "package": "BiocStyle",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 2
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.17.0",
      "bioc": "3.24",
      "repository": "data/experiment"
    },
    {
      "branch": "release",
      "version": "1.16.0",
      "bioc": "3.23",
      "repository": "data/experiment"
    }
  ],
  "_topics": [
    "geo",
    "repositorydata",
    "expressiondata",
    "datapkg"
  ],
  "_stars": 0,
  "_contributors": [
    {
      "user": "davidechicco",
      "count": 21,
      "uuid": 12862995
    }
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "followers": 476,
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_devurl": "https://github.com/davidechicco/healthycontrolspresencechecker",
  "_searchresults": 2,
  "_datapkg": true,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/healthyControlsPresenceChecker.html",
    "extra/manual.pdf",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md"
  ],
  "_cranurl": false,
  "_exports": [
    "healthyControlsCheck"
  ],
  "_help": [
    {
      "page": "healthyControlsCheck",
      "title": "Function that reads in the GEO code of a dataset, and returns true if there's at least a feature containing the healthy controls.",
      "topics": [
        "healthyControlsCheck"
      ]
    },
    {
      "page": "healthyControlsChecker",
      "title": "healthyControlsChecker: A package for verifying the presence of healthy controls in a GEO dataset",
      "topics": [
        "healthyControlsChecker"
      ]
    }
  ],
  "_readme": "https://github.com/bioc/healthyControlsPresenceChecker/raw/HEAD/README.md",
  "_rundeps": [
    "abind",
    "annotate",
    "AnnotationDbi",
    "askpass",
    "Biobase",
    "BiocBaseUtils",
    "BiocFileCache",
    "BiocGenerics",
    "Biostrings",
    "bit",
    "bit64",
    "blob",
    "cachem",
    "cli",
    "clipr",
    "cpp11",
    "crayon",
    "curl",
    "data.table",
    "DBI",
    "dbplyr",
    "DelayedArray",
    "dplyr",
    "fastmap",
    "filelock",
    "geneExpressionFromGEO",
    "generics",
    "GenomicRanges",
    "GEOquery",
    "glue",
    "hms",
    "httr",
    "httr2",
    "IRanges",
    "jsonlite",
    "KEGGREST",
    "lattice",
    "lifecycle",
    "limma",
    "magrittr",
    "Matrix",
    "MatrixGenerics",
    "matrixStats",
    "memoise",
    "mime",
    "openssl",
    "pillar",
    "pkgconfig",
    "png",
    "prettyunits",
    "progress",
    "purrr",
    "R.methodsS3",
    "R.oo",
    "R.utils",
    "R6",
    "readr",
    "rentrez",
    "rlang",
    "RSQLite",
    "rvest",
    "S4Arrays",
    "S4Vectors",
    "selectr",
    "Seqinfo",
    "SparseArray",
    "statmod",
    "stringi",
    "stringr",
    "SummarizedExperiment",
    "sys",
    "tibble",
    "tidyr",
    "tidyselect",
    "tzdb",
    "utf8",
    "vctrs",
    "vroom",
    "withr",
    "XML",
    "xml2",
    "xtable",
    "XVector"
  ],
  "_score": 3,
  "_indexed": true,
  "_nocasepkg": "healthycontrolspresencechecker",
  "_universes": [
    "bioc",
    "davidechicco"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.17.0",
      "date": "2026-10-10T10:47:24.000Z",
      "distro": "resolute",
      "commit": "2b322fdb32ac8c5378b56fbf679256e71e3ebd6d",
      "fileid": "https://r2.ropensci.org/f7ab689f67f309fd5348cd683d50e08bfd2b9a29c9fef47f545edee989b09048",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/38045676741"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.17.0",
      "date": "2026-10-10T10:46:43.000Z",
      "distro": "resolute",
      "commit": "2b322fdb32ac8c5378b56fbf679256e71e3ebd6d",
      "fileid": "https://r2.ropensci.org/06747ceaa8658b6d623783f4144cb6eabf3605c1f5ca198f4e7033a12584b068",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/38045676741"
    }
  ]
}