Package: ggtreeDendro 1.15.0

Guangchuang Yu

ggtreeDendro: Drawing 'dendrogram' using 'ggtree'

Offers a set of 'autoplot' methods to visualize tree-like structures (e.g., hierarchical clustering and classification/regression trees) using 'ggtree'. You can adjust graphical parameters using grammar of graphic syntax and integrate external data to the tree.

Authors:Guangchuang Yu [aut, cre, cph], Shuangbin Xu [ctb], Chuanjie Zhang [ctb]

ggtreeDendro_1.15.0.tar.gz
ggtreeDendro_1.15.0.zip(r-4.7)ggtreeDendro_1.15.0.zip(r-4.6)ggtreeDendro_1.15.0.zip(r-4.5)
ggtreeDendro_1.15.0.tgz(r-4.6-any)ggtreeDendro_1.15.0.tgz(r-4.5-any)
ggtreeDendro_1.15.0.tar.gz(r-4.7-any)ggtreeDendro_1.15.0.tar.gz(r-4.6-any)
ggtreeDendro_1.15.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
ggtreeDendro/json (API)

# Install 'ggtreeDendro' in R:

install.packages('ggtreeDendro', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:ggtreeDendro-1.15.0(bioc 3.24)ggtreeDendro-1.14.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

clustering classification decisiontree phylogenetics visualization

4.20 score 16 scripts 300 downloads 5 exports 72 dependencies

Last updated from:aee364bf2e. Checks:1 NOTE, 7 WARNING, 2 OK. Indexed: yes.

Target	Result	Time
bioc-checks	NOTE	123
linux-devel-x86_64	WARNING	209
source / vignettes	OK	212
linux-release-x86_64	WARNING	169
macos-release-arm64	WARNING	94
macos-oldrel-arm64	WARNING	105
windows-devel	WARNING	109
windows-release	WARNING	116
windows-oldrel	WARNING	115
wasm-release	OK	140

Exports:autoplot geom_line_cutree geom_rect_subtree scale_color_subtree scale_colour_subtree

Dependencies:ape aplot base64enc bslib cachem cli cpp11 digest dplyr evaluate farver fastmap fontawesome fontBitstreamVera fontLiberation fontquiver fs gdtools generics ggfun ggiraph ggplot2 ggplotify ggtree glue gridGraphics gtable highr htmltools htmlwidgets isoband jquerylib jsonlite knitr labeling lattice lazyeval lifecycle magrittr MASS memoise mime nlme patchwork pillar pkgconfig purrr R6 rappdirs RColorBrewer Rcpp rlang rmarkdown S7 sass scales stringi stringr systemfonts tibble tidyr tidyselect tidytree tinytex treeio utf8 vctrs viridisLite withr xfun yaml yulab.utils

Visualizing Dendrogram using ggtree

Rendered fromggtreeDendro.Rmdusingknitr::rmarkdown

Last update: 2023-08-18
Started: 2022-08-12

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
autoplot	autoplot autoplot.agnes autoplot.bclust autoplot.ClusterExperiment autoplot.dendro autoplot.dendrogram autoplot.diana autoplot.genoMatriXeR autoplot.hclust autoplot.hdbscan autoplot.hkmeans autoplot.linkage autoplot.multiLocalZScore autoplot.pvclust autoplot.twins
geom_line_cutree	geom_line_cutree
geom_rect_subtree	geom_rect_subtree
scale_color_subtree	scale_color_subtree scale_colour_subtree