Package: ggtreeDendro 1.9.0

Guangchuang Yu

ggtreeDendro: Drawing 'dendrogram' using 'ggtree'

Offers a set of 'autoplot' methods to visualize tree-like structures (e.g., hierarchical clustering and classification/regression trees) using 'ggtree'. You can adjust graphical parameters using grammar of graphic syntax and integrate external data to the tree.

Authors:Guangchuang Yu [aut, cre, cph], Shuangbin Xu [ctb], Chuanjie Zhang [ctb]

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ggtreeDendro.pdf |ggtreeDendro.html✨
ggtreeDendro/json (API)
NEWS

# Install 'ggtreeDendro' in R:

install.packages('ggtreeDendro', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:ggtreeDendro-1.7.0(bioc 3.20)ggtreeDendro-1.6.0(bioc 3.19)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

clustering classification decisiontree phylogenetics visualization

4.30 score 7 scripts 130 downloads 5 exports 51 dependencies

Last updated 25 days agofrom:ecbc889370. Checks:OK: 1 WARNING: 6. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Oct 30 2024
R-4.5-win	WARNING	Oct 30 2024
R-4.5-linux	WARNING	Oct 30 2024
R-4.4-win	WARNING	Oct 30 2024
R-4.4-mac	WARNING	Oct 30 2024
R-4.3-win	WARNING	Oct 30 2024
R-4.3-mac	WARNING	Oct 30 2024

Exports:autoplot geom_line_cutree geom_rect_subtree scale_color_subtree scale_colour_subtree

Dependencies:ape aplot cli colorspace cpp11 digest dplyr fansi farver fs generics ggfun ggplot2 ggplotify ggtree glue gridGraphics gtable isoband jsonlite labeling lattice lazyeval lifecycle magrittr MASS Matrix mgcv munsell nlme patchwork pillar pkgconfig purrr R6 RColorBrewer Rcpp rlang scales stringi stringr tibble tidyr tidyselect tidytree treeio utf8 vctrs viridisLite withr yulab.utils

Visualizing Dendrogram using ggtree

Guangchuang Yu

Rendered fromggtreeDendro.Rmdusingknitr::rmarkdownon Oct 30 2024.

Last update: 2023-08-18
Started: 2022-08-12

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
autoplot	autoplot autoplot.agnes autoplot.bclust autoplot.ClusterExperiment autoplot.dendro autoplot.dendrogram autoplot.diana autoplot.genoMatriXeR autoplot.hclust autoplot.hdbscan autoplot.hkmeans autoplot.linkage autoplot.multiLocalZScore autoplot.pvclust autoplot.twins
geom_line_cutree	geom_line_cutree
geom_rect_subtree	geom_rect_subtree
scale_color_subtree	scale_color_subtree scale_colour_subtree