NEWS

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ggtreeDendro 1.3.2

• update according to the change of tidytree (2023-08-18, Fri)

ggtreeDendro 1.3.1

• autoplot method for 'dendro' object (ggdendro::dendro_data() output) (2023-03-02, Thu)
  • see also https://github.com/YuLab-SMU/treeio/pull/95

ggtreeDendro 1.2.0

• Bioconductor RELEASE_3_17 (2023-05-03, Wed)

ggtreeDendro 1.1.3

• autoplot method for 'genoMatriXeR' and 'multiLocalZScore' objects (both defined in the 'regioneReloaded' package) (2023-02-11, Sat)
• autoplot method for 'ClusterExperiment' object (2022-11-28, Mon)

ggtreeDendro 1.1.2

• plot_wgcna() for visualizing WGCNA dendrogram (2022-11-06, Sun)
• supports hkmeans object defined in the factoextra package (2022-11-06, Sun)
• set default options to align geom_rect_subtree() and adjust width extension.

ggtreeDendro 1.1.1

• geom_rect_subtree layer to hilight subtrees (2022-11-03, Thu)
• supports bclust object (S3) output by e1071::bclust()
• supports hdbscan object

ggtreeDendro 1.0.0

• Bioconductor RELEASE_3_16 (2022-11-02, Wed)

ggtreeDendro 0.99.11

• autoplot method for bclust object (S4) (2022-10-08, Sat)
• scale_color_subtree from ggtree package (2022-09-23, Fri)
• geom_line_cutree to add a line at the position where the tree was cut by cutree()
• solve issues requested by Bioconductor review (2022-09-21, Wed)
  • https://github.com/Bioconductor/Contributions/issues/2748#issuecomment-1249521341
• add paramters label_edge and alpha in autoplot.pvclust (2022-08-18, Thu)
• add examples of pvclust in vignettes (2022-08-17, Wed)
• autoplot() method for pvclust object (2022-08-15, Mon)
• fixed BiocCheck() (2022-08-12, Fri)
• add biocViews in DESCRIPTION (2022-08-12, Fri)
• autoplot() methods for linkage, hclust, dendrogram, agnes, diana and twins objects (2022-08-12, Fri)