Background | Install | Development Version | Load Test Data | Run | Screenshots of some core views | How to use recount3 to display a pre-processed dataset | How to turn a count matrix into a SummarizedExperiment | How to turn a DESeqDataSet into a SummarizedExperiment | Related Tools | Session Info
Package: geyser 1.5.0
David McGaughey
geyser: Gene Expression displaYer of SummarizedExperiment in R
Lightweight Expression displaYer (plotter / viewer) of SummarizedExperiment object in R. This package provides a quick and easy Shiny-based GUI to empower a user to use a SummarizedExperiment object to view
Authors:
geyser_1.5.0.tar.gz
geyser_1.5.0.zip(r-4.7)geyser_1.5.0.zip(r-4.6)geyser_1.5.0.zip(r-4.5)
geyser_1.5.0.tgz(r-4.6-any)geyser_1.5.0.tgz(r-4.5-any)
geyser_1.5.0.tar.gz(r-4.7-any)geyser_1.5.0.tar.gz(r-4.6-any)
geyser_1.5.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
geyser/json (API)
| # Install 'geyser' in R: |
| install.packages('geyser', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/davemcg/geyser/issues
On BioConductor:geyser-1.5.0(bioc 3.24)geyser-1.4.0(bioc 3.23)
softwareshinyappsguigeneexpression
Last updated from:b00fc35a81. Checks:1 WARNING, 7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | WARNING | 204 | ||
| linux-devel-x86_64 | NOTE | 330 | ||
| source / vignettes | OK | 272 | ||
| linux-release-x86_64 | NOTE | 365 | ||
| macos-release-arm64 | NOTE | 172 | ||
| macos-oldrel-arm64 | NOTE | 140 | ||
| windows-devel | NOTE | 259 | ||
| windows-release | NOTE | 239 | ||
| windows-oldrel | NOTE | 237 | ||
| wasm-release | OK | 197 |
Exports:geyser
Dependencies:abindbase64encbeeswarmBiobaseBiocGenericsBiocManagerBiocStylebookdownbslibcachemcirclizecliclueclustercodetoolscolorspacecommonmarkComplexHeatmapcowplotcpp11crayoncrosstalkDelayedArraydichromatdigestdoParalleldplyrDTevaluatefarverfastmapfontawesomeforeachfsgenericsGenomicRangesGetoptLongggbeeswarmggh4xggplot2ggrepelGlobalOptionsgluegtablehighrhtmltoolshtmlwidgetshttpuvIRangesisobanditeratorsjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclemagrittrmapprojmapsMatrixMatrixGenericsmatrixStatsmemoisemimeotelpalspillarpkgconfigpngpromisespurrrR.methodsS3R.ooR.utilsR6rappdirsRColorBrewerRcpprjsonrlangrmarkdownS4ArraysS4VectorsS7sassscalesSeqinfoshapeshinyshinyjssourcetoolsSparseArraystringistringrSummarizedExperimenttibbletidyrtidyselecttinytexutf8vctrsviporviridisLitewithrxfunxtableXVectoryaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Configuration Helper Functions for Geyser | apply_config |
| Apply embedded config from SummarizedExperiment if present | apply_embedded_config |
| Apply pending group filters to dynamic UI | apply_pending_group_filters |
| Apply pending sample filter to table | apply_pending_sample_filter |
| Create configuration download handler | create_config_download_handler |
| Extract geyser config from SummarizedExperiment metadata | extract_config_from_metadata |
| geyser | geyser |
| Setup configuration preset observer | setup_config_preset_observer |
| Setup configuration upload observer | setup_config_upload_observer |
