Package: geyser 1.5.0

David McGaughey

geyser: Gene Expression displaYer of SummarizedExperiment in R

Lightweight Expression displaYer (plotter / viewer) of SummarizedExperiment object in R. This package provides a quick and easy Shiny-based GUI to empower a user to use a SummarizedExperiment object to view

Authors:David McGaughey [aut, cre]

geyser_1.5.0.tar.gz
geyser_1.5.0.zip(r-4.7)geyser_1.5.0.zip(r-4.6)geyser_1.5.0.zip(r-4.5)
geyser_1.5.0.tgz(r-4.6-any)geyser_1.5.0.tgz(r-4.5-any)
geyser_1.5.0.tar.gz(r-4.7-any)geyser_1.5.0.tar.gz(r-4.6-any)
geyser_1.5.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
geyser/json (API)
NEWS

# Install 'geyser' in R:

install.packages('geyser', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/davemcg/geyser/issues

On BioConductor:geyser-1.5.0(bioc 3.24)geyser-1.4.0(bioc 3.23)

software shinyapps gui geneexpression

4.43 score 18 scripts 236 downloads 1 exports 111 dependencies

Last updated from:b00fc35a81. Checks:1 WARNING, 7 NOTE, 2 OK. Indexed: yes.

Target	Result	Time
bioc-checks	WARNING	196
linux-devel-x86_64	NOTE	371
source / vignettes	OK	287
linux-release-x86_64	NOTE	348
macos-release-arm64	NOTE	243
macos-oldrel-arm64	NOTE	180
windows-devel	NOTE	243
windows-release	NOTE	269
windows-oldrel	NOTE	259
wasm-release	OK	168

Exports:geyser

Dependencies:abind base64enc beeswarm Biobase BiocGenerics BiocManager BiocStyle bookdown bslib cachem circlize cli clue cluster codetools colorspace commonmark ComplexHeatmap cowplot cpp11 crayon crosstalk DelayedArray dichromat digest doParallel dplyr DT evaluate farver fastmap fontawesome foreach fs generics GenomicRanges GetoptLong ggbeeswarm ggh4x ggplot2 ggrepel GlobalOptions glue gtable highr htmltools htmlwidgets httpuv IRanges isoband iterators jquerylib jsonlite knitr labeling later lattice lazyeval lifecycle magrittr mapproj maps Matrix MatrixGenerics matrixStats memoise mime otel pals pillar pkgconfig png promises purrr R.methodsS3 R.oo R.utils R6 rappdirs RColorBrewer Rcpp rjson rlang rmarkdown S4Arrays S4Vectors S7 sass scales Seqinfo shape shiny shinyjs sourcetools SparseArray stringi stringr SummarizedExperiment tibble tidyr tidyselect tinytex utf8 vctrs vipor viridisLite withr xfun xtable XVector yaml

Gene Expression displaY of SummarizedExperiment in R

David McGaughey

Rendered fromGene_Expression_Plotting_GUI.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2023-12-29
Started: 2023-08-10

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Configuration Helper Functions for Geyser	apply_config
Apply embedded config from SummarizedExperiment if present	apply_embedded_config
Apply pending group filters to dynamic UI	apply_pending_group_filters
Apply pending sample filter to table	apply_pending_sample_filter
Create configuration download handler	create_config_download_handler
Extract geyser config from SummarizedExperiment metadata	extract_config_from_metadata
geyser	geyser
Setup configuration preset observer	setup_config_preset_observer
Setup configuration upload observer	setup_config_upload_observer