Package: geyser 0.99.8

David McGaughey

geyser: Gene Expression displaYer of SummarizedExperiment in R

Lightweight Expression displaYer (plotter / viewer) of SummarizedExperiment object in R. This package provides a quick and easy Shiny-based GUI to empower a user to use a SummarizedExperiment object to view (gene) expression grouped from the sample metadata columns (in the `colData` slot). Feature expression can either be viewed with a box plot or a heatmap.

Authors:David McGaughey [aut, cre]

geyser_0.99.8.tar.gz
geyser_0.99.8.zip(r-4.5)geyser_0.99.8.zip(r-4.4)geyser_0.99.8.zip(r-4.3)
geyser_0.99.8.tgz(r-4.4-any)geyser_0.99.8.tgz(r-4.3-any)
geyser_0.99.8.tar.gz(r-4.5-noble)geyser_0.99.8.tar.gz(r-4.4-noble)
geyser_0.99.8.tgz(r-4.4-emscripten)geyser_0.99.8.tgz(r-4.3-emscripten)
geyser.pdf |geyser.html
geyser/json (API)
NEWS

# Install 'geyser' in R:
install.packages('geyser', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/davemcg/geyser/issues

On BioConductor:geyser-0.99.6(bioc 3.21)

softwareshinyappsguigeneexpression

4.65 score 18 scripts 1 exports 110 dependencies

Last updated 8 days agofrom:437a52d847. Checks:1 OK, 6 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 16 2025
R-4.5-winNOTEJan 16 2025
R-4.5-linuxNOTEJan 16 2025
R-4.4-winNOTEJan 16 2025
R-4.4-macNOTEJan 16 2025
R-4.3-winNOTEJan 16 2025
R-4.3-macNOTEJan 16 2025

Exports:geyser

Dependencies:abindaskpassbase64encbeeswarmBiobaseBiocGenericsBiocManagerBiocStylebookdownbslibcachemcirclizecliclueclustercodetoolscolorspacecommonmarkComplexHeatmapcpp11crayoncrosstalkcurlDelayedArraydigestdoParalleldplyrDTevaluatefansifarverfastmapfontawesomeforeachfsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesGetoptLongggbeeswarmggplot2GlobalOptionsgluegtablehighrhtmltoolshtmlwidgetshttpuvhttrIRangesisobanditeratorsjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclemagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmimemunsellnlmeopensslpillarpkgconfigpngpromisespurrrR6rappdirsRColorBrewerRcpprjsonrlangrmarkdownS4ArraysS4VectorssassscalesshapeshinysourcetoolsSparseArraystringistringrSummarizedExperimentsystibbletidyrtidyselecttinytexUCSC.utilsutf8vctrsviporviridisLitewithrxfunxtableXVectoryaml

Gene Expression displaY of SummarizedExperiment in R

Rendered fromGene_Expression_Plotting_GUI.Rmdusingknitr::rmarkdownon Jan 16 2025.

Last update: 2023-12-29
Started: 2023-08-10