| Title: | Gene Expression displaYer of SummarizedExperiment in R |
|---|---|
| Description: | Lightweight Expression displaYer (plotter / viewer) of SummarizedExperiment object in R. This package provides a quick and easy Shiny-based GUI to empower a user to use a SummarizedExperiment object to view (gene) expression grouped from the sample metadata columns (in the `colData` slot). Feature expression can either be viewed with a box plot or a heatmap. |
| Authors: | David McGaughey [aut, cre] |
| Maintainer: | David McGaughey <[email protected]> |
| License: | CC0 |
| Version: | 0.99.8 |
| Built: | 2025-01-16 02:52:16 UTC |
| Source: | https://github.com/bioc/geyser |
Run shiny app to use SummarizedExperiment object to display genomics data
geyser( rse, app_name = "geyser", primary_color = "#3A5836", secondary_color = "#d5673e" )geyser( rse, app_name = "geyser", primary_color = "#3A5836", secondary_color = "#d5673e" )
rse |
SummarizedExperiment object |
app_name |
Title name that goes on the top left of the Shiny app |
primary_color |
The title bar color |
secondary_color |
The plot action button color |
Shiny app uses the rowData rownames to define the genes. The colData field is made fully available to make custom plot groupings.
Shiny app
David McGaughey
if (interactive()){ load(system.file('extdata/tiny_rse.Rdata', package = 'geyser')) geyser(tiny_rse) }if (interactive()){ load(system.file('extdata/tiny_rse.Rdata', package = 'geyser')) geyser(tiny_rse) }