Package: geomeTriD 1.1.9

Jianhong Ou

geomeTriD: A R/Bioconductor package for interactive 3D plot of epigenetic data or single cell data

geomeTriD (Three Dimensional Geometry Package) create interactive 3D plots using the GL library with the 'three.js' visualization library (https://threejs.org) or the rgl library. In addition to creating interactive 3D plots, the application also generates simplified models in 2D. These 2D models provide a more straightforward visual representation, making it easier to analyze and interpret the data quickly. This functionality ensures that users have access to both detailed three-dimensional visualizations and more accessible two-dimensional views, catering to various analytical needs.

Authors:Jianhong Ou [aut, cre]

geomeTriD_1.1.9.tar.gz
geomeTriD_1.1.9.zip(r-4.5)geomeTriD_1.1.9.zip(r-4.4)
geomeTriD_1.1.9.tgz(r-4.5-any)geomeTriD_1.1.9.tgz(r-4.4-any)
geomeTriD_1.1.9.tar.gz(r-4.5-noble)geomeTriD_1.1.9.tar.gz(r-4.4-noble)
geomeTriD_1.1.9.tgz(r-4.4-emscripten)
geomeTriD.pdf |geomeTriD.html
geomeTriD/json (API)
NEWS

# Install 'geomeTriD' in R:
install.packages('geomeTriD', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/jianhong/geometrid/issues

On BioConductor:geomeTriD-1.1.9(bioc 3.21)geomeTriD-1.0.1(bioc 3.20)

visualization

5.10 score 1 stars 7 scripts 142 downloads 14 exports 157 dependencies

Last updated 2 months agofrom:f140e46f70. Checks:7 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 15 2025
R-4.5-winOKMar 15 2025
R-4.5-macOKMar 15 2025
R-4.5-linuxOKMar 15 2025
R-4.4-winOKMar 15 2025
R-4.4-macOKMar 15 2025
R-4.4-linuxOKMar 15 2025

Exports:alignCooravailableGeometriescreate3dGenomicSignalsextractBackbonePositionsloopBouquetPlotmdsPlotrenderthreeJsViewerrglViewersmooth3dPointsthreeJsGeometrythreejsOutputthreeJsViewerview3dCellsview3dStructure

Dependencies:abindAnnotationDbiAnnotationFilteraskpassbackportsbase64encBHBiobaseBiocFileCacheBiocGenericsBiocIOBiocParallelbiomaRtBiostringsbiovizBasebitbit64bitopsblobBSgenomebslibcachemcheckmatecliclustercodetoolscolorspacecpp11crayoncurldata.tableDBIdbplyrDelayedArraydeldirdichromatdigestdplyrensembldbevaluatefansifarverfastmapfilelockfontawesomeforeignformatRFormulafsfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicFeaturesGenomicRangesggplot2gluegridExtragrImportgtableGvizhighrHmischmshtmlTablehtmltoolshtmlwidgetshttrhttr2igraphInteractionSetinterpIRangesisobandjpegjquerylibjsonliteKEGGRESTknitrlabelinglambda.rlatticelatticeExtralazyevallifecyclemagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmimemunsellnlmennetopensslpillarpkgconfigplogrplotrixpngprettyunitsprogressProtGenericspurrrR6rappdirsRColorBrewerRcppRcppEigenRCurlrestfulrrglrhdf5rhdf5filtersRhdf5libRhtslibrjsonrlangrmarkdownrpartRsamtoolsRSQLiterstudioapirtracklayerS4ArraysS4VectorssassscalessnowSparseArraystrawrstringistringrSummarizedExperimentsystibbletidyrtidyselecttinytextrackViewertxdbmakerUCSC.utilsutf8VariantAnnotationvctrsviridisviridisLitewithrxfunXMLxml2XVectoryaml

geomeTriD Vignette: Plot data in 3D

Rendered fromgeomeTriD.Rmdusingknitr::rmarkdownon Mar 15 2025.

Last update: 2024-10-15
Started: 2024-09-01