NEWS
geomeTriD 1.5.1
IMPROVEMENT
geomeTriD 1.3.21
IMPROVEMENT
- improve the reset button for tjviewer
geomeTriD 1.3.20
IMPROVEMENT
- update the documentations in DESCRIPTION.
geomeTriD 1.3.19
IMPROVEMENT
- update the documentations.
- add a reset button for tjviewer
geomeTriD 1.3.17
BUG FIXES
geomeTriD 1.3.15
NEW FEATURES
- view3dStructure for multiple sequences.
geomeTriD 1.3.14
NEW FEATURES
- Add scale bar in threejsViewer.
geomeTriD 1.3.13
BUG FIXES
- Fix the issue for fill_NA if there are multiple NA values in dist matrix.
geomeTriD 1.3.12
NEW FEATURES
- Add function to call TADs and compartments for spatial distance.
geomeTriD 1.3.11
NEW FEATURES
- Add DSDC distance method for cellDistance.
geomeTriD 1.3.10
IMPROVEMENT
- Fix multiple issues for PDF exporter.
geomeTriD 1.3.9
NEW FEATURES
- Add NMI and ARI distance method for cellDistance.
geomeTriD 1.3.8
IMPROVEMENT
- Add lwd controlor for GenomicInteraction links.
geomeTriD 1.3.7
IMPROVEMENT
- Change the default value of normalized for TSS measurement to false.
geomeTriD 1.3.6
NEW FEATURES
- Export the function cellDistance.
geomeTriD 1.3.5
IMPROVEMENT
- Multiprocess for cellClusters.
geomeTriD 1.3.4
NEW FEATURES
- Add function cellClusters.
geomeTriD 1.3.2
BUG FIXES
- Move all geos into a sub properties in tjviewer.
geomeTriD 1.3.1
NEW FEATURES
- Add hide/show button for each element in tjviewer.
geomeTriD 1.1.11
NEW FEATURES
- Add createTADGeometries function.
geomeTriD 1.1.10
NEW FEATURES
geomeTriD 1.1.9
BUG FIXES
geomeTriD 1.1.8
BUG FIXES
- Fix the issues "Uncaught SyntaxError: Expected ',' or ']' after array element in JSON" if data.frame is too big.
geomeTriD 1.1.7
BUG FIXES
- Fix the issues of measurment marker do not rotate and unexpected resize window when export.
geomeTriD 1.1.6
BUG FIXES
- Export pdf with visible layers only.
geomeTriD 1.1.5
NEW FEATURES
geomeTriD 1.1.4
BUG FIXES
- Fix the input check issue in kabsch.
geomeTriD 1.1.3
BUG FIXES
geomeTriD 1.1.2
NEW FEATURES
- Add resolution for view3dStructure.
geomeTriD 1.1.1
NEW FEATURES
- Add autocomplete input for search key words.
geomeTriD 0.99.18
BUG FIXES
- Fix the issue for measurements in threeJsViewer when the world matrix updated.
geomeTriD 0.99.17
NEW FEATURES
- Add parameter genomicScoreRange parameter for create3dGenomicSignals.
geomeTriD 0.99.16
- Fix the error in mdsPlot: 'dims' must contain all (i,j) pairs
geomeTriD 0.99.15
BUG FIXES
- Change the background color set.
- Remove local version of CSS2DRenderer.
geomeTriD 0.99.14
NEW FEATURES
- add measurement for threeJsViewer.
geomeTriD 0.99.13
NEW FEATURES
- add switch for orthographic and perspective projection to camera.
- add flip controller.
geomeTriD 0.99.12
NEW FEATURES
- change OrbitControls to ArcballControls.
geomeTriD 0.99.11
BUG FIXES
- Handle the error if NA values is in the GenoSig of create3dGenomicSignals.
geomeTriD 0.99.10
NEW FEATURES
- Add title and subregion for threeJsViewer.
geomeTriD 0.99.9
NEW FEATURES
- Add possible to export the GRanges object for mdsPlot.
geomeTriD 0.99.8
BUG FIXES
- Fix the warning 'rgl.init' failed, running with 'rgl.useNULL = TRUE'.
geomeTriD 0.99.7
NEW FEATURES
- Add 'saveWidget' sample code to vignettes.
geomeTriD 0.99.6
NEW FEATURES
- Add LICENSE items for threejs.
- Add help page for the package itself.
geomeTriD 0.99.5
BUG FIXES
- Fix the warning message in create3dGenomicSignals when calling mapply.
geomeTriD 0.99.4
NEW FEATURES
- Add type 'polygon' to threeJsGeometry.
geomeTriD 0.99.3
NEW FEATURES
- Add rotation slot to threeJsGeometry.
geomeTriD 0.99.2
NEW FEATURES
- Fix a bug that color info is missing when create 3d geometries.
- Update the documentation.
geomeTriD 0.99.0
NEW FEATURES
geomeTriD 0.0.25
BUG FIXES
- simplify the documentation.
geomeTriD 0.0.24
NEW FEATURES
- add more geometries for rglViewer.
geomeTriD 0.0.23
BUG FIXES
- Fix multiple bugs.
- Add multiple unit test.
- Rewrite the plotInteractionData vignette.
geomeTriD 0.0.22
NEW FEATURES
- Fix the code style.
- Add multiple unit test.
- export the create3dGenomicSignals function.
geomeTriD 0.0.21
NEW FEATURES
- Add resize block for threeJsViewer.
geomeTriD 0.0.20
NEW FEATURES
geomeTriD 0.0.19
NEW FEATURES
- Add group adjust controller for threeJsViewer.
- Add background color controller for threeJsViewer.
- Make the controller dragable for threeJsViewer.
- Add signalTransformFun for view3dStructure.
geomeTriD 0.0.18
NEW FEATURES
- Add search by coordinates for threeJsViewer.
geomeTriD 0.0.17
NEW FEATURES
- Add key control and linked OribitControl for threeJsViewer.
geomeTriD 0.0.16
NEW FEATURES
- Add side by side comparison for threeJsViewer.
geomeTriD 0.0.15
NEW FEATURES
- Add search box for threeJsViewer.
geomeTriD 0.0.14
BUG FIXES
geomeTriD 0.0.13
NEW FEATURES
- update ATAC-seq signals to Genomic signals.
geomeTriD 0.0.12
NEW FEATURES
- add plotScCells vignettes.
geomeTriD 0.0.11
BUG FIXES
geomeTriD 0.0.9
NEW FEATURES
- add video exporter for tjviewer.
geomeTriD 0.0.8
NEW FEATURES
geomeTriD 0.0.7
BUG FIXES
- Change atacSig to segments for tjviewer.
geomeTriD 0.0.6
BUG FIXES
- Fix the arrow direction for tjviewer.
geomeTriD 0.0.5
BUG FIXES
geomeTriD 0.0.4
NEW FEATURES
geomeTriD 0.0.3
NEW FEATURES
geomeTriD 0.0.2
NEW FEATURES
geomeTriD 0.0.1
NEW FEATURES
- Init.
- Create the htmlwidgets.