NEWS

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geomeTriD 1.5.1

IMPROVEMENT

• add citation.

geomeTriD 1.3.21

IMPROVEMENT

• improve the reset button for tjviewer

geomeTriD 1.3.20

IMPROVEMENT

• update the documentations in DESCRIPTION.

geomeTriD 1.3.19

IMPROVEMENT

• update the documentations.
• add a reset button for tjviewer

geomeTriD 1.3.17

BUG FIXES

• update the author list.

geomeTriD 1.3.15

NEW FEATURES

• view3dStructure for multiple sequences.

geomeTriD 1.3.14

NEW FEATURES

• Add scale bar in threejsViewer.

geomeTriD 1.3.13

BUG FIXES

• Fix the issue for fill_NA if there are multiple NA values in dist matrix.

geomeTriD 1.3.12

NEW FEATURES

• Add function to call TADs and compartments for spatial distance.

geomeTriD 1.3.11

NEW FEATURES

• Add DSDC distance method for cellDistance.

geomeTriD 1.3.10

IMPROVEMENT

• Fix multiple issues for PDF exporter.

geomeTriD 1.3.9

NEW FEATURES

• Add NMI and ARI distance method for cellDistance.

geomeTriD 1.3.8

IMPROVEMENT

• Add lwd controlor for GenomicInteraction links.

geomeTriD 1.3.7

IMPROVEMENT

• Change the default value of normalized for TSS measurement to false.

geomeTriD 1.3.6

NEW FEATURES

• Export the function cellDistance.

geomeTriD 1.3.5

IMPROVEMENT

• Multiprocess for cellClusters.

geomeTriD 1.3.4

NEW FEATURES

• Add function cellClusters.

geomeTriD 1.3.2

BUG FIXES

• Move all geos into a sub properties in tjviewer.

geomeTriD 1.3.1

NEW FEATURES

• Add hide/show button for each element in tjviewer.

geomeTriD 1.1.11

NEW FEATURES

• Add createTADGeometries function.

geomeTriD 1.1.10

NEW FEATURES

• Add pointCluster.

geomeTriD 1.1.9

BUG FIXES

• Fix multiple typos.

geomeTriD 1.1.8

BUG FIXES

• Fix the issues "Uncaught SyntaxError: Expected ',' or ']' after array element in JSON" if data.frame is too big.

geomeTriD 1.1.7

BUG FIXES

• Fix the issues of measurment marker do not rotate and unexpected resize window when export.

geomeTriD 1.1.6

BUG FIXES

• Export pdf with visible layers only.

geomeTriD 1.1.5

NEW FEATURES

• Add pdf exporter.

geomeTriD 1.1.4

BUG FIXES

• Fix the input check issue in kabsch.

geomeTriD 1.1.3

BUG FIXES

• Update email address.

geomeTriD 1.1.2

NEW FEATURES

• Add resolution for view3dStructure.

geomeTriD 1.1.1

NEW FEATURES

• Add autocomplete input for search key words.

geomeTriD 0.99.18

BUG FIXES

• Fix the issue for measurements in threeJsViewer when the world matrix updated.

geomeTriD 0.99.17

NEW FEATURES

• Add parameter genomicScoreRange parameter for create3dGenomicSignals.

geomeTriD 0.99.16

• Fix the error in mdsPlot: 'dims' must contain all (i,j) pairs

geomeTriD 0.99.15

BUG FIXES

• Change the background color set.
• Remove local version of CSS2DRenderer.

geomeTriD 0.99.14

NEW FEATURES

• add measurement for threeJsViewer.

geomeTriD 0.99.13

NEW FEATURES

• add switch for orthographic and perspective projection to camera.
• add flip controller.

geomeTriD 0.99.12

NEW FEATURES

• change OrbitControls to ArcballControls.

geomeTriD 0.99.11

BUG FIXES

• Handle the error if NA values is in the GenoSig of create3dGenomicSignals.

geomeTriD 0.99.10

NEW FEATURES

• Add title and subregion for threeJsViewer.

geomeTriD 0.99.9

NEW FEATURES

• Add possible to export the GRanges object for mdsPlot.

geomeTriD 0.99.8

BUG FIXES

• Fix the warning 'rgl.init' failed, running with 'rgl.useNULL = TRUE'.

geomeTriD 0.99.7

NEW FEATURES

• Add 'saveWidget' sample code to vignettes.

geomeTriD 0.99.6

NEW FEATURES

• Add LICENSE items for threejs.
• Add help page for the package itself.

geomeTriD 0.99.5

BUG FIXES

• Fix the warning message in create3dGenomicSignals when calling mapply.

geomeTriD 0.99.4

NEW FEATURES

• Add type 'polygon' to threeJsGeometry.

geomeTriD 0.99.3

NEW FEATURES

• Add rotation slot to threeJsGeometry.

geomeTriD 0.99.2

NEW FEATURES

• Fix a bug that color info is missing when create 3d geometries.
• Update the documentation.

geomeTriD 0.99.0

NEW FEATURES

• Prepare to submittion.

geomeTriD 0.0.25

BUG FIXES

• simplify the documentation.

geomeTriD 0.0.24

NEW FEATURES

• add more geometries for rglViewer.

geomeTriD 0.0.23

BUG FIXES

• Fix multiple bugs.
• Add multiple unit test.
• Rewrite the plotInteractionData vignette.

geomeTriD 0.0.22

NEW FEATURES

• Fix the code style.
• Add multiple unit test.
• export the create3dGenomicSignals function.

geomeTriD 0.0.21

NEW FEATURES

• Add resize block for threeJsViewer.

geomeTriD 0.0.20

NEW FEATURES

• Add unit test.

geomeTriD 0.0.19

NEW FEATURES

• Add group adjust controller for threeJsViewer.
• Add background color controller for threeJsViewer.
• Make the controller dragable for threeJsViewer.
• Add signalTransformFun for view3dStructure.

geomeTriD 0.0.18

NEW FEATURES

• Add search by coordinates for threeJsViewer.

geomeTriD 0.0.17

NEW FEATURES

• Add key control and linked OribitControl for threeJsViewer.

geomeTriD 0.0.16

NEW FEATURES

• Add side by side comparison for threeJsViewer.

geomeTriD 0.0.15

NEW FEATURES

• Add search box for threeJsViewer.

geomeTriD 0.0.14

BUG FIXES

• Center the 3d plots.

geomeTriD 0.0.13

NEW FEATURES

• update ATAC-seq signals to Genomic signals.

geomeTriD 0.0.12

NEW FEATURES

• add plotScCells vignettes.

geomeTriD 0.0.11

BUG FIXES

• fix the license issue.

geomeTriD 0.0.9

NEW FEATURES

• add video exporter for tjviewer.

geomeTriD 0.0.8

NEW FEATURES

• add view 3d cells.

geomeTriD 0.0.7

BUG FIXES

• Change atacSig to segments for tjviewer.

geomeTriD 0.0.6

BUG FIXES

• Fix the arrow direction for tjviewer.

geomeTriD 0.0.5

BUG FIXES

• Rename the package.

geomeTriD 0.0.4

NEW FEATURES

• Add a vignettes.

geomeTriD 0.0.3

NEW FEATURES

• Add label geometry.

geomeTriD 0.0.2

NEW FEATURES

• Add text geometry.

geomeTriD 0.0.1

NEW FEATURES

• Init.
• Create the htmlwidgets.