Package: frma 1.57.0

Matthew N. McCall

frma: Frozen RMA and Barcode

Preprocessing and analysis for single microarrays and microarray batches.

Authors:Matthew N. McCall <[email protected]>, Rafael A. Irizarry <[email protected]>, with contributions from Terry Therneau

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frma.pdf |frma.html✨
frma/json (API)
NEWS

# Install 'frma' in R:
install.packages('frma', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

On BioConductor:frma-1.57.0(bioc 3.20)frma-1.56.0(bioc 3.19)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

bioconductor-package

12 exports 3.80 score 57 dependencies 1 dependents 26 mentions

Last updated 2 months agofrom:74072e92b3

Exports:barcodefrmaGNUSEinitializerandomeffectsrandomeffects<-residualsresiduals<-se.exprsse.exprs<-weightsweights<-

Dependencies:abindaffxparseraffyaffyioaskpassBiobaseBiocGenericsBiocManagerBiostringsbitbit64blobcachemclicodetoolscpp11crayoncurlDBIDelayedArrayfastmapffforeachGenomeInfoDbGenomeInfoDbDataGenomicRangesgluehttrIRangesiteratorsjsonlitelatticelifecycleMASSMatrixMatrixGenericsmatrixStatsmemoisemimeoligooligoClassesopensslpkgconfigplogrpreprocessCoreR6rlangRSQLiteS4ArraysS4VectorsSparseArraySummarizedExperimentsysUCSC.utilsvctrsXVectorzlibbioc

Readme and manuals

Help Manual

Help pageTopics
Gene Expression Barcodebarcode
Frozen Robust Multi-Array Analysisfrma
Class to Contain and Describe High-Throughput Expression Level Assays preprocessed with fRMAas.ExpressionSet,frmaExpressionSet-method class:frmaExpressionSet frmaExpressionSet frmaExpressionSet-class frmaExpressionSet-methods initialize,frmaExpressionSet-method randomeffects randomeffects,frmaExpressionSet-method randomeffects<- randomeffects<-,frmaExpressionSet-method residuals,frmaExpressionSet-method residuals<- residuals<-,frmaExpressionSet-method se.exprs,ExpressionSet-method se.exprs,frmaExpressionSet-method se.exprs<- se.exprs<-,ExpressionSet-method se.exprs<-,frmaExpressionSet-method weights,frmaExpressionSet-method weights<- weights<-,frmaExpressionSet-method
GNUSEGNUSE