Frozen Robust Multiarray Analysis (fRMA) | Creation of Gene Expression Barcodes
Package: frma 1.65.0
Matthew N. McCall
frma: Frozen RMA and Barcode
Preprocessing and analysis for single microarrays and microarray batches.
Authors:
frma_1.65.0.tar.gz
frma_1.65.0.zip(r-4.7)frma_1.65.0.zip(r-4.6)frma_1.65.0.zip(r-4.5)
frma_1.65.0.tgz(r-4.6-any)frma_1.65.0.tgz(r-4.5-any)
frma_1.65.0.tar.gz(r-4.7-any)frma_1.65.0.tar.gz(r-4.6-any)
frma_1.65.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
frma/json (API)
| # Install 'frma' in R: |
| install.packages('frma', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:frma-1.65.0(bioc 3.24)frma-1.64.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
softwaremicroarraypreprocessing
Last updated from:c703be2075. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 178 | ||
| linux-devel-x86_64 | NOTE | 349 | ||
| source / vignettes | OK | 275 | ||
| linux-release-x86_64 | NOTE | 350 | ||
| macos-release-arm64 | NOTE | 177 | ||
| macos-oldrel-arm64 | NOTE | 176 | ||
| windows-devel | NOTE | 270 | ||
| windows-release | NOTE | 205 | ||
| windows-oldrel | NOTE | 219 | ||
| wasm-release | OK | 118 |
Exports:barcodefrmaGNUSEinitializerandomeffectsrandomeffects<-residualsresiduals<-se.exprsse.exprs<-weightsweights<-
Dependencies:abindaffxparseraffyaffyioBiobaseBiocGenericsBiocManagerBiostringsbitbit64blobcachemclicodetoolscpp11crayonDBIDelayedArrayfastmapffforeachgenericsGenomicRangesglueIRangesiteratorslatticelifecycleMASSMatrixMatrixGenericsmatrixStatsmemoiseoligooligoClassespkgconfigpreprocessCorerlangRSQLiteS4ArraysS4VectorsSeqinfoSparseArraySummarizedExperimentvctrsXVector
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Gene Expression Barcode | barcode |
| Frozen Robust Multi-Array Analysis | frma |
| Class to Contain and Describe High-Throughput Expression Level Assays preprocessed with fRMA | as.ExpressionSet,frmaExpressionSet-method class:frmaExpressionSet frmaExpressionSet frmaExpressionSet-class frmaExpressionSet-methods initialize,frmaExpressionSet-method randomeffects randomeffects,frmaExpressionSet-method randomeffects<- randomeffects<-,frmaExpressionSet-method residuals,frmaExpressionSet-method residuals<- residuals<-,frmaExpressionSet-method se.exprs,ExpressionSet-method se.exprs,frmaExpressionSet-method se.exprs<- se.exprs<-,ExpressionSet-method se.exprs<-,frmaExpressionSet-method weights,frmaExpressionSet-method weights<- weights<-,frmaExpressionSet-method |
| GNUSE | GNUSE |
