Package: frma 1.59.0
Matthew N. McCall
frma: Frozen RMA and Barcode
Preprocessing and analysis for single microarrays and microarray batches.
Authors:
frma_1.59.0.tar.gz
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frma.pdf |frma.html✨
frma/json (API)
NEWS
| # Install 'frma' in R: |
| install.packages('frma', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:frma-1.59.0(bioc 3.21)frma-1.58.0(bioc 3.20)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
softwaremicroarraypreprocessing
Last updated 25 days agofrom:93b19511a3. Checks:ERROR: 2 WARNING: 5. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | FAIL | Nov 14 2024 |
| R-4.5-win | WARNING | Nov 14 2024 |
| R-4.5-linux | ERROR | Nov 14 2024 |
| R-4.4-win | WARNING | Nov 14 2024 |
| R-4.4-mac | WARNING | Nov 14 2024 |
| R-4.3-win | WARNING | Nov 14 2024 |
| R-4.3-mac | WARNING | Nov 14 2024 |
Exports:barcodefrmaGNUSEinitializerandomeffectsrandomeffects<-residualsresiduals<-se.exprsse.exprs<-weightsweights<-
Dependencies:abindaffxparseraffyaffyioaskpassBiobaseBiocGenericsBiocManagerBiostringsbitbit64blobcachemclicodetoolscpp11crayoncurlDBIDelayedArrayfastmapffforeachgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesgluehttrIRangesiteratorsjsonlitelatticelifecycleMASSMatrixMatrixGenericsmatrixStatsmemoisemimeoligooligoClassesopensslpkgconfigplogrpreprocessCoreR6rlangRSQLiteS4ArraysS4VectorsSparseArraySummarizedExperimentsysUCSC.utilsvctrsXVectorzlibbioc
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Gene Expression Barcode | barcode |
| Frozen Robust Multi-Array Analysis | frma |
| Class to Contain and Describe High-Throughput Expression Level Assays preprocessed with fRMA | as.ExpressionSet,frmaExpressionSet-method class:frmaExpressionSet frmaExpressionSet frmaExpressionSet-class frmaExpressionSet-methods initialize,frmaExpressionSet-method randomeffects randomeffects,frmaExpressionSet-method randomeffects<- randomeffects<-,frmaExpressionSet-method residuals,frmaExpressionSet-method residuals<- residuals<-,frmaExpressionSet-method se.exprs,ExpressionSet-method se.exprs,frmaExpressionSet-method se.exprs<- se.exprs<-,ExpressionSet-method se.exprs<-,frmaExpressionSet-method weights,frmaExpressionSet-method weights<- weights<-,frmaExpressionSet-method |
| GNUSE | GNUSE |
