For use of the frma function, please cite: McCall MN, Bolstad BM, and Irizarry RA (2010). Frozen Robust Multi-Array Analysis (fRMA), Biostatistics, 11(2):242-253. A BibTeX entry for LaTeX users is @Article{, author = {Matthew N McCall and Benjamin M Bolstad and Rafael A Irizarry}, title = {Frozen robust multiarray analysis (fRMA)}, journal = {Biostatistics}, volume = {11}, number = {2}, year = {2010}, pages = {242--253}, publisher = {Biometrika Trust}, } For use of the barcode function, please cite: McCall MN, Uppal K, Jaffee HA, Zilliox MJ, and Irizarry RA (2011). The Gene Expression Barcode: leveraging public data repositories to begin cataloging the human and murine transcriptomes, Nucleic Acids Research, 39:D1011-5. A BibTeX entry for LaTeX users is @Article{, author = {Matthew N McCall and Karan Uppal and Harris A Jaffee and Michael J Zilliox and Rafael A Irizarry}, title = {The Gene Expression Barcode: leveraging public data repositories to begin cataloging the human and murine transcriptomes}, journal = {Nucleic Acids Research}, volume = {39}, number = {suppl 1}, year = {2011}, pages = {D1011--D1015}, publisher = {Oxford Univ Press}, } For use of the GNUSE function, please cite: McCall MN, Murakami PN, Lukk M, Huber W, Irizarry RA (2011). Assessing Affymetrix GeneChip Microarray Quality, BMC Bioinformatics, 12:137. A BibTeX entry for LaTeX users is @Article{, author = {Matthew N McCall and Peter N Murakami and Margus Lukk and Wolfgang Huber and Rafael A Irizarry}, title = {Assessing affymetrix GeneChip microarray quality}, journal = {BMC Bioinformatics}, volume = {12}, number = {1}, year = {2011}, pages = {137}, publisher = {BioMed Central Ltd}, } For use of the frma function with Gene ST and Exon ST arrays, please also cite: McCall MN, Jaffee HA, Irizarry RA (2012). fRMA ST: Frozen robust multiarray analysis for Affymetrix Exon and Gene ST arrays, Bioinformatics, 28(23):3153-3154. A BibTeX entry for LaTeX users is @Article{, author = {Matthew N McCall and Harris A Jaffee and Rafael A Irizarry}, title = {fRMA ST: Frozen robust multiarray analysis for Affymetrix Exon and Gene ST arrays}, journal = {Bioinformatics}, volume = {28}, number = {23}, year = {2012}, pages = {3153-3154}, publisher = {Oxford Univ Press}, }