Package: fraq 1.1.1

Travers Ching

fraq: A High-Throughput and Extensible Toolkit for Processing FASTQ Data

High-throughput extensible toolkit for processing FASTQ data. The goal of this package is to empower users to quickly build out small programmatic 'kernels' to define any FASTQ processing task they may need. Builds on Intel TBB’s flow graph to orchestrate concurrent I/O and data processing; throughput can be as fast as compression and disk speed allows. The package also ships with a suite of predefined kernels for common FASTQ tasks.

Authors:Travers Ching [aut, cre, cph], Yann Collet [ctb, cph], Facebook, Inc. [cph], Reichardt Tino [ctb, cph], Skibinski Przemyslaw [ctb, cph], Mori Yuta [ctb, cph]

fraq_1.1.1.tar.gz
fraq_1.1.1.zip(r-4.7)fraq_1.1.1.zip(r-4.6)fraq_1.1.1.zip(r-4.5)
fraq_1.1.1.tgz(r-4.6-x86_64)fraq_1.1.1.tgz(r-4.6-arm64)fraq_1.1.1.tgz(r-4.5-x86_64)fraq_1.1.1.tgz(r-4.5-arm64)
fraq_1.1.1.tar.gz(r-4.7-arm64)fraq_1.1.1.tar.gz(r-4.7-x86_64)fraq_1.1.1.tar.gz(r-4.6-arm64)fraq_1.1.1.tar.gz(r-4.6-x86_64)
manual.pdf |manual.html✨
card.svg |card.png
fraq/json (API)
NEWS

# Install 'fraq' in R:
install.packages('fraq', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/traversc/fraq/issues

Uses libs:
  • c++– GNU Standard C++ Library v3

On BioConductor:fraq-1.1.1(bioc 3.24)fraq-1.0.0(bioc 3.23)

softwareinfrastructuresequencingdnaseqqualitycontrolalignmentcpp

4.30 score 1 stars 9 scripts 120 downloads 22 exports 20 dependencies

Last updated from:d482adc4a8. Checks:1 NOTE, 12 OK, 1 FAIL. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksNOTE198
linux-devel-arm64OK292
linux-devel-x86_64OK330
source / vignettesOK392
linux-release-arm64OK288
linux-release-x86_64OK268
macos-release-arm64OK208
macos-release-x86_64OK548
macos-oldrel-arm64OK223
macos-oldrel-x86_64OK335
windows-develOK239
windows-releaseOK269
windows-oldrelOK259
wasm-releaseFAIL149

Exports:fraq_alignfraq_chunkfraq_concatfraq_convertfraq_count_barcodesfraq_demuxfraq_downsamplefraq_export_shortreadqfraq_fifo_supportedfraq_import_shortreadqfraq_mem_listfraq_mem_loadfraq_mem_removefraq_merge_pairsfraq_optionsfraq_quality_filterfraq_rcpp_templatefraq_run_rfraq_slicefraq_summaryfraq_trim_adaptersgenerate_random_fastq

Dependencies:BiocGenericsBiostringsclicrayonedlibRgenericsglueIRangeslifecyclemagrittrRcppRcppParallelrlangS4VectorsSeqinfostringfishstringistringrvctrsXVector

fraq: A high-throughput extensible toolkit for processing fastq data

Rendered fromfraq_getting_started.Rmdusingknitr::rmarkdownon Jun 02 2026.

Last update: 2026-05-03
Started: 2025-11-13